BME103 s2013:T900 Group8 L2: Difference between revisions

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'''Calibration'''<br>
'''Calibration'''<br>
link : [[Image:BME_group8_lab_2_write_up.png|500px|thumb|Open PCR Machine used in Lab]]<br>
[[Image:BME_group8_lab_2_write_up.png|400px|thumb|Open PCR Machine used in Lab]]<br>


Distance and angles between the smart phone and =
Distance and angles between the smart phone and =
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'''Solutions Used for Calibration''' ''[See worksheet page 5]''
'''Solutions Used for Calibration'''
{| {{table}} width=700
{| {{table}} width=700
|-style="background:#f0f0f0;"
| Solution || Concetration of SYBR green
|-
|-
| row 1 cell 1 || row 1 cell 2 || row 1 cell 3 || row 1 cell 4
| 1 || Water
|-
|-
| row 2 cell 1 || row 2 cell 2 || row 2 cell 3 || row 2 cell 4
| 2 || 0.25 μg/mL
|-
|-
| row 3 cell 1 || row 3 cell 2 || row 3 cell 3 || row 3 cell 4
| 3 || 0.05 μg/mL
|-
| 4 || 1.0 μg/mL
|-
| 5 || 2.0 μg/mL
|-
| 6 || 5.0 μg/mL
|}
|}
''[Add more rows as needed]''
 





Revision as of 16:57, 31 March 2013

BME 103 Spring 2013 Home
People
Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: student
Name: student
Name: student
Name: student
Name: student
Name: student


LAB 2 WRITE-UP

Background Information

SYBR Green Dye
[A short summary describing SYBR green dye]


Single-Drop Fluorimeter
[A description of the single-drop fluorimeter device. Add a PHOTO for bonus points]


How the Fluorescence Technique Works
[In your own words, a summary of the information from page 9 of the worksheet]



Procedure


Smart Phone Camera Tech Specs

Phone : iphone 4
Tech specs "
5-megapixel iSight camera

Video recording, HD (720p) up to 30 frames per second with audio

VGA-quality photos and video at up to 30 frames per second with the front camera

Tap to focus video or still images

LED flash

Photo and video geotagging
"

Source of Tech specs http://www.apple.com/iphone/iphone-4/specs.html

Smart Phone Camera Settings

Settings : Settings used in lab Observations
Flash: Turned off N/A
ISO setting: ISO setting 80-1000 No control over ISO settings
White Balance: Auto White balance No control over white balance
Exposure: Auto exposure No control over exposure
Saturation: Very high No control over saturation
Contrast: Very high No control over contrast
Source: http://www.imaging-resource.com/PRODS/IPHONE4/IPHONE4A.HTM This source was used to find out what were the defult settings of iphone 4


  • [No additional phones or cameras used]


Calibration

Open PCR Machine used in Lab

Distance and angles between the smart phone and =

  • candle = 3.62cm
  • table = 5.67cm
  • angle from camera to drop = approx 90°


Solutions Used for Calibration

Solution Concetration of SYBR green
1 Water
2 0.25 μg/mL
3 0.05 μg/mL
4 1.0 μg/mL
5 2.0 μg/mL
6 5.0 μg/mL


Placing Samples onto the Fluorimeter

  • [Step one, in your OWN words]
  • [Step two, in your own words]
  • [Step three, in your own words]
  • [etc.]


Data Analysis

Representative Images of Samples

[Show an IMAGE where you drew a circle around the droplet with the freehand tool for a sample with no DNA]

[Show an IMAGE where you drew a circle around the droplet with the freehand tool for a sample with DNA (positive signal)]


Image J Values for All Samples [See worksheet page 5]

row 1 cell 1 row 1 cell 2 row 1 cell 3 row 1 cell 4 row 1 cell 5
row 2 cell 1 row 2 cell 2 row 2 cell 3 row 2 cell 4 row 2 cell 5
row 3 cell 1 row 3 cell 2 row 3 cell 3 row 3 cell 4 row 2 cell 5

[Add more rows as needed]


Fitting a Straight Line
[Place an IMAGE of your Excel plot with a line of best fit here. See worksheet page 8]