BME494s2013 Project Team3: Difference between revisions

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By modifying the input and output for the Lac switch, it may be possible to produce materials such as plastics. The switch could be triggered by another environmental factor other than [IPTG], and instead of producing GFP, more useful materials like plastic could be an output. Currently, production of plastics is a very energy intensive process, and by using bacteria for the production, we can save energy and limit waste into the environment.
By modifying the input and output for the Lac switch, it may be possible to produce materials such as plastics. The switch could be triggered by another environmental factor other than [IPTG], and instead of producing GFP, more useful materials like plastic could be an output. Currently, production of plastics is a very energy intensive process, and by using bacteria for the production, we can save energy and limit waste into the environment.
<!-- In the next paragraph, explain how the IPTG-input/ fluorescent protein-output Lac switch you proposed to build (in Unit 2) serves as a roof-of-concept for the practical application you just described -->
<!-- In the next paragraph, explain how the IPTG-input/ fluorescent protein-output Lac switch you proposed to build (in Unit 2) serves as a roof-of-concept for the practical application you just described -->
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The IPTG-input/fluorescent protein-output is proof of concept for the production of synthetic materials such as plastic being created by bacteria. In the original project, a synthetic compound was utilized to trigger the metabolic pathway for the degradation of lactose. Using synthetic biology, we can splice together different genetic features to create an entirely new metabolic response. We can find a promoter that responds to a different input. In the natural Lac-operon, the cell produces proteins for the breakdown of lactose. We modified the natural process by initiating the production of GFP instead of the functional proteins found in the original process. It seems, that if we are able to control our protein output, we can produce synthetic products as well.
The IPTG-input/fluorescent protein-output is proof of concept for the production of synthetic materials such as plastic being created by bacteria. In the original project, a synthetic compound was utilized to trigger the metabolic pathway for the degradation of lactose. Using synthetic biology, we can splice together different genetic features to create an entirely new metabolic response. We can find a promoter that responds to a different input. In the natural Lac-operon, the cell produces proteins for the breakdown of lactose. We modified the natural process by initiating the production of GFP instead of the functional proteins found in the original process. It seems, that if we are able to control our protein output, we can produce synthetic products as well.



Revision as of 12:29, 24 April 2013


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Overview & Purpose

Text describing the image

By modifying the input and output for the Lac switch, it may be possible to produce materials such as plastics. The switch could be triggered by another environmental factor other than [IPTG], and instead of producing GFP, more useful materials like plastic could be an output. Currently, production of plastics is a very energy intensive process, and by using bacteria for the production, we can save energy and limit waste into the environment.
The IPTG-input/fluorescent protein-output is proof of concept for the production of synthetic materials such as plastic being created by bacteria. In the original project, a synthetic compound was utilized to trigger the metabolic pathway for the degradation of lactose. Using synthetic biology, we can splice together different genetic features to create an entirely new metabolic response. We can find a promoter that responds to a different input. In the natural Lac-operon, the cell produces proteins for the breakdown of lactose. We modified the natural process by initiating the production of GFP instead of the functional proteins found in the original process. It seems, that if we are able to control our protein output, we can produce synthetic products as well.










Background

Diagram of Lac operon and how it functions without lactose present (top) and with lactose present (bottom)














Design: Our genetic circuit

OUR GENE SWITCH:


AND gate Gene Switch: Both [IPTG] AND [Low Glucose Levels] conditions must be met for GFP production












Building: Assembly Scheme













Testing: Modeling and GFP Imaging


A LAC SWITCH MODEL
We used a previously published synthetic switch, developed by Ceroni et al., to understand how our system could potentially be modeled and simulated.


AN INTERACTIVE MODEL
We used a model of the natural Lac operon to understand how changing the parameter values changes the behavior of the system.


COLLECTING IMPERICAL VALUES TO IMPROVE THE MODEL
We explored how one technique, imaging via microscopy could be used to determine the production rate of an output protein, in this case GFP in yeast, could be used to determine a "real" value for maximum GFP production rate under our own laboratory conditions.



Ideally, the GFP production rate measured by this method could be entered as a value for [which parameter] in the Ceroni et al. model.











Human Practices

Danger of Chemicals in Farmlands














Our Team

Your Name


  • My name is ###, and I am a ### majoring in ###. I am taking BME 494 because ###. An interesting fact about me is that ###.



Your Name


  • My name is ###, and I am a ### majoring in ###. I am taking BME 494 because ###. An interesting fact about me is that ###.



Your Name


  • My name is ###, and I am a ### majoring in ###. I am taking BME 494 because ###. An interesting fact about me is that ###.







Works Cited

[1] Full reference.

[2] Full reference.

[3] Full reference.