Beauchamp:Lab Notebook

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(Electrophysiology/Electrophysiology+MRI)
 
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To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type
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  site:openwetware.org/wiki/Beauchamp ExperimentSheet
==General Important Notes==
==General Important Notes==
#[[Beauchamp:Software_Installation|How To Install Software and set up new computers]]
#[[Beauchamp:Software_Installation|How To Install Software and set up new computers]]
#[[Beauchamp:Ordering|How To order things for the lab]]
#[[Beauchamp:Ordering|How To order things for the lab]]
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==Experimental Design and Analysis==
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#[[Beauchamp:fMRIOverview|Overview of MRI Experiments]]
#[[Beauchamp:Subjects|Information for Subjects and Experimenters, such as Human Subjects Training]]
#[[Beauchamp:Subjects|Information for Subjects and Experimenters, such as Human Subjects Training]]
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To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type
 
-
  site:openwetware.org/wiki/Beauchamp ExperimentSheet
 
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==MRI: fMRI Experimental Design and Analysis==
 
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#[[Beauchamp:fMRIOverview|Overview of fMRI Analysis]]
 
#[[Beauchamp:HowToScan|How to Collect MRI Data and Use the Scanner]]
#[[Beauchamp:HowToScan|How to Collect MRI Data and Use the Scanner]]
#[[Beauchamp:CreateAFNIBRIKfromMR|Getting raw data from the scanner]]
#[[Beauchamp:CreateAFNIBRIKfromMR|Getting raw data from the scanner]]
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==Electrophysiology/Electrophysiology+MRI==
==Electrophysiology/Electrophysiology+MRI==
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#[[Beauchamp:Electrode Localization and Naming]]
#[[Beauchamp:Electrode Localization and Naming]]
#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]]
#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]]
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]]
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]]
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#[[Beauchamp:ECogAnalysisv2|Analyzing ECoG data (by Muge Ozker Sertel)]]
#[[Making Resting State Correlation Maps]]
#[[Making Resting State Correlation Maps]]

Current revision

Brain picture
Beauchamp Lab



To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type

 site:openwetware.org/wiki/Beauchamp ExperimentSheet

Contents

General Important Notes

  1. How To Install Software and set up new computers
  2. How To order things for the lab

Experimental Design and Analysis

  1. Overview of MRI Experiments
  2. Information for Subjects and Experimenters, such as Human Subjects Training
  3. How to Collect MRI Data and Use the Scanner
  4. Getting raw data from the scanner
  5. Turning the raw data into AFNI BRIKs
  6. Cortical Surface models overview
  7. Creating Random Stimulus Orderings For Rapid Event-Related Designs
  8. Motion and Distortion Correction
  9. Creating Volume Average Datasets with AFNI
  10. MVPA Notes
  11. RealTimefMRI
  12. Group Analysis with Unequal Group Sizes using GroupAna.m
  13. HiResolution fMRI
  14. ROI Analysis

MRI: DTI Analysis

  1. Processing Diffusion Tensor Imaging Data
  2. Automatic VOI Initialization for Interactive Tractography
  3. Deterministic Tractography Constrained by Image Masks

TMS/TMS+MRI

  1. Overview of an MRI/fMRI guided TMS Experiment
  2. Notes on TMS

NIRS

  1. Eswen Fava's NIRS Manual

Electrophysiology/Electrophysiology+MRI

  1. Beauchamp:Electrode Localization and Naming
  2. Electrophysiology Protocols
  3. Analyzing ECoG data (by Adam Burch)
  4. Analyzing ECoG data (by Muge Ozker Sertel)
  5. Making Resting State Correlation Maps

Psychophysics

G Power 3 is a useful program for power analysis http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/

  1. New Auditory Tactile Experiment
  2. d' (d-prime) Analysis
  3. Race Model Analysis
  4. Stimuli for 100 Hue Experiment
  5. Causal Inference model for Synchrony Perception
  6. Predicting McGurk Fusion Rates

Misc. Experiment Notes

  1. McGurk Stimuli
  2. Autism Data
  3. SR EyeLink Eye Tracker Setup
  4. OLD ASL Eye Tracker Setup
  5. Retinotopic Mapping
  6. AFNI Atlas Values
  7. Tactile Experiment Notes
  8. Notes on analyzing MRI data (old)
  9. ANOVAs in MATLAB
  10. HNL Projector Settings
  11. Notes on Stimulus Projector and Screen in UT Philips Scanner
  12. Auditory-only stimuli
  13. Video Stimulus Creation
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