Beauchamp:Lab Notebook: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
mNo edit summary |
No edit summary |
||
| (11 intermediate revisions by 6 users not shown) | |||
| Line 10: | Line 10: | ||
#[[Beauchamp:AFNI_Install|How To Install AFNI]] | #[[Beauchamp:AFNI_Install|How To Install AFNI]] | ||
#[[Beauchamp:Ordering|How To order things for the lab]] | #[[Beauchamp:Ordering|How To order things for the lab]] | ||
#[[Beauchamp:CAMRI_PTS|Sign-up for CAMRI Project Tracking System]] | |||
==Experimental Design and Analysis== | ==Experimental Design and Analysis== | ||
| Line 26: | Line 27: | ||
#[[Beauchamp:HiResfMRI|HiResolution fMRI]] | #[[Beauchamp:HiResfMRI|HiResolution fMRI]] | ||
#[[Beauchamp:ROIanalysis|ROI Analysis]] | #[[Beauchamp:ROIanalysis|ROI Analysis]] | ||
#[[Beauchamp:AutomatingAFNI|Automating AFNI and SUMA]] | |||
==MRI: DTI Analysis== | ==MRI: DTI Analysis== | ||
| Line 43: | Line 45: | ||
#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]] | #[[Beauchamp:Electrophysiology|Electrophysiology Protocols]] | ||
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]] | #[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]] | ||
#[[Beauchamp:Creating a Surface Model and Electrode Localization (by Muge Ozker Sertel)]] | #[[Beauchamp: Creating a Surface Model and Electrode Localization (by Muge Ozker Sertel)|Creating a Surface Model and Electrode Localization (by Muge Ozker Sertel)]] | ||
#[[Beauchamp:ALICE|Electrode Localization using steps from the ALICE package]] | |||
#[[Beauchamp: ECogAnalysisV2|Analyzing ECoG data (by Muge Ozker Sertel)]] | #[[Beauchamp: ECogAnalysisV2|Analyzing ECoG data (by Muge Ozker Sertel)]] | ||
#[[Beauchamp:ActivityMaps|Making Activity Maps]] | |||
#[[Making Resting State Correlation Maps]] | #[[Making Resting State Correlation Maps]] | ||
#[[Beauchamp:TensorECOG|Tensor Analysis of ECOG data]] | |||
==Psychophysics== | ==Psychophysics== | ||
| Line 56: | Line 62: | ||
#[[Beauchamp:CIMS|Causal Inference model for Synchrony Perception]] | #[[Beauchamp:CIMS|Causal Inference model for Synchrony Perception]] | ||
#[[Beauchamp:NED|Predicting McGurk Fusion Rates]] | #[[Beauchamp:NED|Predicting McGurk Fusion Rates]] | ||
#[[Beauchamp:Playback Rate|Effect of Video Playback Rate on McGurk Fusion Rates]] | |||
==Misc. Experiment Notes== | ==Misc. Experiment Notes== | ||
#[http://afni.nimh.nih.gov/pub/dist/doc/htmldoc/ Link to AFNI/SUMA documentation ] | |||
#[[Beauchamp:Stimuli|McGurk Stimuli]] | #[[Beauchamp:Stimuli|McGurk Stimuli]] | ||
#[[Beauchamp:LocalizerStimuli|Word Localizer Stimuli]] | #[[Beauchamp:LocalizerStimuli|Word Localizer Stimuli]] | ||
| Line 72: | Line 80: | ||
#[[Beauchamp:Unisensory Stimuli|Auditory-only stimuli]] | #[[Beauchamp:Unisensory Stimuli|Auditory-only stimuli]] | ||
#[[Beauchamp:VideoStimulusCreation|Video Stimulus Creation]] | #[[Beauchamp:VideoStimulusCreation|Video Stimulus Creation]] | ||
#[[Beauchamp:PrintingBrains|How to 3D Print Brains]] | |||
#[[Beauchamp:TensorECOG|RHOPLS for ECoG Data]] | |||
Revision as of 10:23, 21 July 2017
|
Beauchamp Lab
|
To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type
site:openwetware.org/wiki/Beauchamp ExperimentSheet
General Important Notes
- How To Install Software and set up new computers
- How To Install AFNI
- How To order things for the lab
- Sign-up for CAMRI Project Tracking System
Experimental Design and Analysis
- Overview of MRI Experiments
- Information for Subjects and Experimenters, such as Human Subjects Training
- How to Collect MRI Data and Use the Scanner
- Getting raw data from the scanner
- Turning the raw data into AFNI BRIKs
- Cortical Surface models overview
- Creating Random Stimulus Orderings For Rapid Event-Related Designs
- Motion and Distortion Correction
- Creating Volume Average Datasets with AFNI
- MVPA Notes
- RealTimefMRI
- Group Analysis with Unequal Group Sizes using GroupAna.m
- HiResolution fMRI
- ROI Analysis
- Automating AFNI and SUMA
MRI: DTI Analysis
- Processing Diffusion Tensor Imaging Data
- Automatic VOI Initialization for Interactive Tractography
- Deterministic Tractography Constrained by Image Masks
TMS/TMS+MRI
NIRS
Electrophysiology/Electrophysiology+MRI
- Beauchamp:Electrode Localization and Naming
- Electrophysiology Protocols
- Analyzing ECoG data (by Adam Burch)
- Creating a Surface Model and Electrode Localization (by Muge Ozker Sertel)
- Electrode Localization using steps from the ALICE package
- Analyzing ECoG data (by Muge Ozker Sertel)
- Making Activity Maps
- Making Resting State Correlation Maps
- Tensor Analysis of ECOG data
Psychophysics
G Power 3 is a useful program for power analysis http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/
- New Auditory Tactile Experiment
- d' (d-prime) Analysis
- Race Model Analysis
- Stimuli for 100 Hue Experiment
- Causal Inference model for Synchrony Perception
- Predicting McGurk Fusion Rates
- Effect of Video Playback Rate on McGurk Fusion Rates
Misc. Experiment Notes
- Link to AFNI/SUMA documentation
- McGurk Stimuli
- Word Localizer Stimuli
- Autism Data
- SR EyeLink Eye Tracker Setup
- OLD ASL Eye Tracker Setup
- Retinotopic Mapping
- AFNI Atlas Values
- Tactile Experiment Notes
- Notes on analyzing MRI data (old)
- ANOVAs in MATLAB
- HNL Projector Settings
- Notes on Stimulus Projector and Screen in UT Philips Scanner
- Auditory-only stimuli
- Video Stimulus Creation
- How to 3D Print Brains
- RHOPLS for ECoG Data
