Beauchamp:Lab Notebook

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(Experimental Design and Analysis)
Current revision (15:19, 9 September 2014) (view source)
(Psychophysics)
 
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#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]]
#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]]
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]]
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]]
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#[[Beauchamp:ECogAnalysisv2|Analyzing ECoG data (by Muge Ozker Sertel)]]
#[[Making Resting State Correlation Maps]]
#[[Making Resting State Correlation Maps]]
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#[[Beauchamp:100Hue|Stimuli for 100 Hue Experiment]]
#[[Beauchamp:100Hue|Stimuli for 100 Hue Experiment]]
#[[Beauchamp:CIMS|Causal Inference model for Synchrony Perception]]
#[[Beauchamp:CIMS|Causal Inference model for Synchrony Perception]]
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#[[Beauchamp:MCG_Predict|Predicting McGurk Fusion Rates]]
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#[[Beauchamp:NED|Predicting McGurk Fusion Rates]]
==Misc. Experiment Notes==  
==Misc. Experiment Notes==  
#[[Beauchamp:Stimuli|McGurk Stimuli]]
#[[Beauchamp:Stimuli|McGurk Stimuli]]
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#[[Beauchamp:LocalizerStimuli|Word Localizer Stimuli]]
#[[Beauchamp:Autism|Autism Data]]
#[[Beauchamp:Autism|Autism Data]]
#[[Beauchamp:NewEyeTrackSetup|SR EyeLink Eye Tracker Setup]]
#[[Beauchamp:NewEyeTrackSetup|SR EyeLink Eye Tracker Setup]]

Current revision

Brain picture
Beauchamp Lab



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Contents

General Important Notes

  1. How To Install Software and set up new computers
  2. How To order things for the lab

Experimental Design and Analysis

  1. Overview of MRI Experiments
  2. Information for Subjects and Experimenters, such as Human Subjects Training
  3. How to Collect MRI Data and Use the Scanner
  4. Getting raw data from the scanner
  5. Turning the raw data into AFNI BRIKs
  6. Cortical Surface models overview
  7. Creating Random Stimulus Orderings For Rapid Event-Related Designs
  8. Motion and Distortion Correction
  9. Creating Volume Average Datasets with AFNI
  10. MVPA Notes
  11. RealTimefMRI
  12. Group Analysis with Unequal Group Sizes using GroupAna.m
  13. HiResolution fMRI
  14. ROI Analysis

MRI: DTI Analysis

  1. Processing Diffusion Tensor Imaging Data
  2. Automatic VOI Initialization for Interactive Tractography
  3. Deterministic Tractography Constrained by Image Masks

TMS/TMS+MRI

  1. Overview of an MRI/fMRI guided TMS Experiment
  2. Notes on TMS

NIRS

  1. Eswen Fava's NIRS Manual

Electrophysiology/Electrophysiology+MRI

  1. Beauchamp:Electrode Localization and Naming
  2. Electrophysiology Protocols
  3. Analyzing ECoG data (by Adam Burch)
  4. Analyzing ECoG data (by Muge Ozker Sertel)
  5. Making Resting State Correlation Maps

Psychophysics

G Power 3 is a useful program for power analysis http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/

  1. New Auditory Tactile Experiment
  2. d' (d-prime) Analysis
  3. Race Model Analysis
  4. Stimuli for 100 Hue Experiment
  5. Causal Inference model for Synchrony Perception
  6. Predicting McGurk Fusion Rates

Misc. Experiment Notes

  1. McGurk Stimuli
  2. Word Localizer Stimuli
  3. Autism Data
  4. SR EyeLink Eye Tracker Setup
  5. OLD ASL Eye Tracker Setup
  6. Retinotopic Mapping
  7. AFNI Atlas Values
  8. Tactile Experiment Notes
  9. Notes on analyzing MRI data (old)
  10. ANOVAs in MATLAB
  11. HNL Projector Settings
  12. Notes on Stimulus Projector and Screen in UT Philips Scanner
  13. Auditory-only stimuli
  14. Video Stimulus Creation
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