Beauchamp:Lab Notebook: Difference between revisions
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#[[Beauchamp:Subjects|Information for Subjects]] | #[[Beauchamp:Subjects|Information for Subjects]] | ||
==MRI== | ==MRI: Cortical Surface Models== | ||
#[[Beauchamp:PrepCortSurfModels|Preparation for Creating Cortical Surface Models]] | #[[Beauchamp:PrepCortSurfModels|Preparation for Creating Cortical Surface Models]] | ||
#[[Beauchamp:CreateCortSurfMod|Creating Cortical Surface Models]] | #[[Beauchamp:CreateCortSurfMod|Creating Cortical Surface Models]] | ||
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#[[Beauchamp:CreateStndSurfModNew|Creating Standardized Surface Models]] | #[[Beauchamp:CreateStndSurfModNew|Creating Standardized Surface Models]] | ||
#[[Beauchamp:FSStndSurf|FreeSurfer Standard Surface Models]] | #[[Beauchamp:FSStndSurf|FreeSurfer Standard Surface Models]] | ||
#[[Beauchamp:SurfDist|Finding Distances on the Surface]] | |||
#[[Beauchamp:SurfaceMetrics|Finding Closest node on the Surface]] | |||
#[[Beauchamp:SUMA|SUMA]] | |||
#[[Beauchamp:FreeSurfer|Free Surfer]] | |||
#[[Beauchamp:Caret|Caret]] | |||
==MRI: fMRI Analysis Stream== | |||
#[[Beauchamp:fMRIOverview|Overview of fMRI Analysis]] | |||
#[[Beauchamp:MotionCorrection|Motion and Distortion Correction]] | |||
#[[Beauchamp:CreateAFNIBRIKfromMR|Creating AFNI BRIKs from MR Data ]] | |||
#[[Beauchamp:VolAverage|Creating Volume Average Datasets with AFNI]] | #[[Beauchamp:VolAverage|Creating Volume Average Datasets with AFNI]] | ||
#[[Beauchamp:AFNI|AFNI]] | |||
==MRI: DTI Analysis== | |||
#[[Beauchamp:ProcessDiffTensImgData|Processing Diffusion Tensor Imaging Data ]] | #[[Beauchamp:ProcessDiffTensImgData|Processing Diffusion Tensor Imaging Data ]] | ||
#[[Beauchamp:InitialAutoVOIforIT|Automatic VOI Initialization for Interactive Tractography ]] | #[[Beauchamp:InitialAutoVOIforIT|Automatic VOI Initialization for Interactive Tractography ]] | ||
#[[Beauchamp:DetermineTract|Deterministic Tractography Constrained by Image Masks ]] | #[[Beauchamp:DetermineTract|Deterministic Tractography Constrained by Image Masks ]] | ||
==TMS/TMS+MRI== | ==TMS/TMS+MRI== | ||
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#[[Beauchamp:Stimuli|McGurk Stimuli]] | #[[Beauchamp:Stimuli|McGurk Stimuli]] | ||
#[[Beauchamp:Autism|Autism Data]] | #[[Beauchamp:Autism|Autism Data]] | ||
#[[Beauchamp:EyeTrackSetup|Scanner Stimulus and Eye Tracker Setup]] | |||
#[[Beauchamp:Retinotopy|Retinotopic Mapping ]] | |||
#[[Beauchamp:ZillesAtlasValues|AFNI Atlas Values]] | |||
#[[Beauchamp:Tactile_Experiment_Notes|Tactile Experiment Notes]] | |||
#[[Beauchamp:MVPA Notes|MVPA Notes]] | |||
#[[Beauchamp:RealTimefMRI|RealTimefMRI]] | |||
#[[Beauchamp:MRI_Data_Analysis|Notes on analyzing MRI data (old)]] | |||
Revision as of 14:12, 27 August 2010
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Beauchamp Lab
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General Notes
Subject Forms
MRI: Cortical Surface Models
- Preparation for Creating Cortical Surface Models
- Creating Cortical Surface Models
- Using Cortical Surface Models
- What If a Cortical Surface Model Exists Already
- What If Cortical Surface Model Looks Bad
- Creating Standardized Surface Models
- FreeSurfer Standard Surface Models
- Finding Distances on the Surface
- Finding Closest node on the Surface
- SUMA
- Free Surfer
- Caret
MRI: fMRI Analysis Stream
- Overview of fMRI Analysis
- Motion and Distortion Correction
- Creating AFNI BRIKs from MR Data
- Creating Volume Average Datasets with AFNI
- AFNI
MRI: DTI Analysis
- Processing Diffusion Tensor Imaging Data
- Automatic VOI Initialization for Interactive Tractography
- Deterministic Tractography Constrained by Image Masks
TMS/TMS+MRI
Electrophysiology/Electrophysiology+MRI
