Beauchamp:Lab Notebook

Beauchamp Lab

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To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type

 site:openwetware.org/wiki/Beauchamp ExperimentSheet

General Important Notes

1. How To Install Software and set up new computers
2. How To Install AFNI
3. How To order things for the lab

Experimental Design and Analysis

1. Overview of MRI Experiments
2. Information for Subjects and Experimenters, such as Human Subjects Training
3. How to Collect MRI Data and Use the Scanner
4. Getting raw data from the scanner
5. Turning the raw data into AFNI BRIKs
6. Cortical Surface models overview
7. Creating Random Stimulus Orderings For Rapid Event-Related Designs
8. Motion and Distortion Correction
9. Creating Volume Average Datasets with AFNI
10. MVPA Notes
11. RealTimefMRI
12. Group Analysis with Unequal Group Sizes using GroupAna.m
13. HiResolution fMRI
14. ROI Analysis

MRI: DTI Analysis

1. Processing Diffusion Tensor Imaging Data
2. Automatic VOI Initialization for Interactive Tractography
3. Deterministic Tractography Constrained by Image Masks

TMS/TMS+MRI

1. Overview of an MRI/fMRI guided TMS Experiment
2. Notes on TMS

NIRS

1. Eswen Fava's NIRS Manual

Electrophysiology/Electrophysiology+MRI

1. Beauchamp:Electrode Localization and Naming
2. Electrophysiology Protocols
3. Analyzing ECoG data (by Adam Burch)
4. Analyzing ECoG data (by Muge Ozker Sertel)
5. Making Resting State Correlation Maps

Psychophysics

G Power 3 is a useful program for power analysis http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/

1. New Auditory Tactile Experiment
2. d' (d-prime) Analysis
3. Race Model Analysis
4. Stimuli for 100 Hue Experiment
5. Causal Inference model for Synchrony Perception
6. Predicting McGurk Fusion Rates

Misc. Experiment Notes

1. McGurk Stimuli
2. Word Localizer Stimuli
3. Autism Data
4. SR EyeLink Eye Tracker Setup
5. OLD ASL Eye Tracker Setup
6. Retinotopic Mapping
7. AFNI Atlas Values
8. Tactile Experiment Notes
9. Notes on analyzing MRI data (old)
10. ANOVAs in MATLAB
11. HNL Projector Settings
12. Notes on Stimulus Projector and Screen in UT Philips Scanner
13. Auditory-only stimuli
14. Video Stimulus Creation