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| =Drosophila=
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| *[http://www.flybase.org/ Flybase]
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| *[http://www.flymine.org/ Flymine]
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| *[http://www.fruitfly.org/ Berkeley Drosophila Genome Project]
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| *[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=106617476&clade=insect&org=0&db=0 Drosophila Genome Browser Gateway @ UCSC]
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| *[http://www.modencode.org/ modENCODE]
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| *[http://redfly.ccr.buffalo.edu/ Regulatory Element Database for Drosophila]
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| *[http://bdtnp.lbl.gov/Fly-Net/ Berkeley Drosophila Transcription Network Project]
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| *[http://furlonglab.embl.de/data/browse_chip_mod/ The Furlong Laboratory ChIP-chip Experiment Browser]
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| <br />
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| =Zebrafish=
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| *[http://zfin.org ZFIN]
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| *[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=106619536&clade=vertebrate&org=Zebrafish&db=0 Zebrafish Genome Browser Gateway @ UCSC]
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| *[http://www.ensembl.org/Danio_rerio/index.html Zebrafish @ Ensembl]
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| *[http://zf-espresso.tuebingen.mpg.de/search.php ZF-expresso]
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| <br />
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| =non-coding RNAs=
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| *[http://www.sanger.ac.uk/Software/Rfam/index.shtml Rfam]
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| *[http://www.euchromatin.net/ Euchromatin Network].
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| *[http://www.ncrna.org/ ncrna.org]: Yhe portal site for the Funtional RNA Project.
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| *[http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi RNAfold]: Vienna RNA Secondary Structure Prediction.
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| *[http://genome.ku.dk/resources/war/ Webserver for Aligning structural RNAs].
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| <br />
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| *[http://microrna.sanger.ac.uk/sequences/index.shtml miRBase]
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| *[http://www.diana.pcbi.upenn.edu/tarbase.html TarBase]
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| *[http://www.diana.pcbi.upenn.edu/cgi-bin/micro_t.cgi DIANA-microT]
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| *[http://pictar.bio.nyu.edu/cgi-bin/new_PicTar_fly.cgi?species=fly PicTar|Fly]
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| *[http://www.targetscan.org/fly_12/ TargetScanFly 4.2]
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| *[http://cbio.mskcc.org/mirnaviewer/ miRanda]
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| *[http://mirna.imbb.forth.gr/microinspector/ MicroInspector]
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| *[http://cbcsrv.watson.ibm.com/rna22.html RNA22]
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| *[http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html PITA]
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| *[http://tagc.univ-mrs.fr/mirna/ MirEval]
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| <br />
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