BioCurious: DIY Ultrasonic Transformation: Difference between revisions

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==Materials==
==Materials==


For a 50 μL PCR reaction:
For an XX μL transformation:


* 35 μL H<sub>2</sub>O
Equipment: 
* 5 μL 10X PCR buffer
Off-the-shelf Ultrasonic Jewellery cleaning box with about 1L bath
* 5 μL 2mM dNTPs (each)
Strains
* 1.5 μL 50mM MgCl<sub>2</sub>
DNA
* 1 μL 50μM sense primer
reagent in Dark Glass
* 1 μL 50μM antisense primer
flat bottom tubes 5 mL with Plastic Caps
* 1 μL 5nM DNA template
 
* 0.5 μL TAQ DNA polyermerase
Sonicator Essentials:
42 KHz
35 watt peak
20 sq cm transducer area in center of bath
                        Bath filled with tap water at room temperature


==Procedure==
==Procedure==

Revision as of 19:12, 18 March 2013

Overview

Experiment: Transform HB101 Strain with pGlo plasmid using ultrasound device

Materials

For an XX μL transformation:

Equipment: Off-the-shelf Ultrasonic Jewellery cleaning box with about 1L bath Strains DNA reagent in Dark Glass flat bottom tubes 5 mL with Plastic Caps

Sonicator Essentials: 42 KHz 35 watt peak 20 sq cm transducer area in center of bath

                       Bath filled with tap water at room temperature

Procedure

  1. In a PCR tube, mix the components on ice in the order they are listed above.
  2. Perform thermocycling program
    1. 95 °C 5 min
    2. 95 °C 30 s
    3. TH 30 s
    4. 72 °C 1 min for each 1 kb PCR product
    5. Repeat steps 2-4 a total of 12-36 times (24 is standard).
    6. 72 °C 5 min
    7. 12 °C hold

Notes

Please feel free to post comments, questions, or improvements to this protocol. Happy to have your input!

  1. List troubleshooting tips here.
  2. You can also link to FAQs/tips provided by other sources such as the manufacturer or other websites.
  3. Anecdotal observations that might be of use to others can also be posted here.

Please sign your name to your note by adding '''*~~~~''': to the beginning of your tip.

References

Relevant papers and books

  1. Goldbeter, A and Koshland, DE (1981) - Proc Natl Acad Sci U S A 78(11) 6840-4 PMID 6947258
  2. Jacob, F and Monod, J J (1961) - Mol Biol 3(3) 318-56 PMID 13718526
  3. Ptashne, M (2004) Genetic Switch: Phage Lambda Revisited - Cold Spring Harbor Laboratory Press ISBN 0879697164

Contact

  • Who has experience with this protocol?

or instead, discuss this protocol.