BioMicroCenter:BIG meeting: Difference between revisions

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{{BioMicroCenter}}


Please fill out the [http://www.doodle.com/8aetbhdxx4p68byx survey] to help us schedule the next academic year.
Full Speaker Rotation is '''[[BioMicroCenter:BIG_Rotation||HERE]]'''.
 
==2012==
==2012==
{| border=1  
{| border=1  
Line 31: Line 30:
  | MIT
  | MIT
  | [http://whereis.mit.edu/?go=68 68-181]
  | [http://whereis.mit.edu/?go=68 68-181]
  |  
  | RNA-Seq quality control and quantitation of alternative RNA processing
  |-
  |-
  | 4/12 (Thursday)
  | 4/12 (Thursday)
Line 65: Line 64:
  | Juli Klemm (NIH/NCI)
  | Juli Klemm (NIH/NCI)
  | MIT
  | MIT
  | TBA
  | [http://whereis.mit.edu/?go=68 68-156]
  | TBA
  | [[BioMicroCenter:BIG_meeting:KlemmTalk|Informatics at NCI]]
  |-
  |-
  | 7/12
  | 7/12
Line 72: Line 71:
  | Ryan Abo
  | Ryan Abo
  | MIT
  | MIT
| [http://whereis.mit.edu/?go=68 68-274]
| discovery of active enhancers using GRO-seq data. <BR>
Core, LJ, Waterfall, JJ, Lis, JT (2008). Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 5909:1845-8. <BR>
Melgar, MF, Collins, FS, Sethupathy, P (2011). Discovery of active enhancers through bidirectional expression of short transcripts. Genome Biol., 12, 11:R113.
|-
| 7/26
| 12p
| Yanqun Wang
| MGH
  | TBA
  | TBA
  | TBA
  | TBA
  |-
  |-
  | 7/26
  | 9/13
| 12p
| Stuart Levine
| MIT
| [http://whereis.mit.edu/?go=68 68-156]
| Replicates in Informatics: http://genome.cshlp.org/content/22/9/1813.full.pdf+html
|-
| 9/27
| 12p
| Charlie Whittaker
| KI
| [http://whereis.mit.edu/?go=68 68-156]
| Teaching Bioinformatics
|-
| 10/18
| 12p
| Brad Chapman
| MIT
| [http://whereis.mit.edu/?go=68 68-156]
| Biological resources for Amazon: CloudBioLinux, CloudMan, BioCloudCentral [http://www.slideshare.net/chapmanb/big-cloud-2012 slides]
|-
| 11/8
  | 12p  
  | 12p  
  | Yanqun Wang
  | Ruslan Sadreyev
  | MGH
  | MGH
| Darwin Room
| Methods for analyzing allelic expression of RNA.
|-
| 11/29
| 12p
| George Bell
| WI
  | TBA
  | TBA
  | TBA
  | TBA

Revision as of 08:55, 14 November 2012

HOME -- SEQUENCING -- LIBRARY PREP -- HIGH-THROUGHPUT -- COMPUTING -- OTHER TECHNOLOGY

Full Speaker Rotation is |HERE.

2012

DATE TIME Presenter Location Room NOTES
1/26 (Thursday) 12p Brian Haas (Broad Institute) MIT 76-558 Trinity
2/23 (Thursday) 12p Brad Chapman MIT 68-180 Extending the GATK for variant comparisons; slides code
3/22 (Thursday) 12p Vincent Butty MIT 68-181 RNA-Seq quality control and quantitation of alternative RNA processing
4/12 (Thursday) 12p Kip Bodi Tufts Medical Journal Club
5/3 12p Huiming Ding MIT 68-180 "High-throughput generation, optimization and analysis of genome-scale metabolic models." by Henry, C. S. et al.
5/24 12p Joshua Ainsley (Tufts) - Hosted by Lakshmanan Iyer Tufts Sackler 851 Characterizing dendritic translation with RNA-Seq
6/7 12p Toshi Ohsumi MGH Sinches 5 - Darwin Room MolBioLib: a C++11 Bioinformatics Framework
6/21 12p Juli Klemm (NIH/NCI) MIT 68-156 Informatics at NCI
7/12 12p Ryan Abo MIT 68-274 discovery of active enhancers using GRO-seq data.

Core, LJ, Waterfall, JJ, Lis, JT (2008). Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 5909:1845-8.
Melgar, MF, Collins, FS, Sethupathy, P (2011). Discovery of active enhancers through bidirectional expression of short transcripts. Genome Biol., 12, 11:R113.

7/26 12p Yanqun Wang MGH TBA TBA
9/13 12p Stuart Levine MIT 68-156 Replicates in Informatics: http://genome.cshlp.org/content/22/9/1813.full.pdf+html
9/27 12p Charlie Whittaker KI 68-156 Teaching Bioinformatics
10/18 12p Brad Chapman MIT 68-156 Biological resources for Amazon: CloudBioLinux, CloudMan, BioCloudCentral slides
11/8 12p Ruslan Sadreyev MGH Darwin Room Methods for analyzing allelic expression of RNA.
11/29 12p George Bell WI TBA TBA

2011

Schedule for 2011.

DATE TIME Presenter Location Room NOTES
1/18 12p Toshiro Ohsumi MGH Simches 5290
2/1 12p Stuart Levine MIT 68-329 Illumina Quality Control Modules
2/15 12p Paola Favaretto MIT 76-358 Matlab
3/8 12p Fugen Li MIT 68-329 Enhancer Analysis
3/22 12p Charlie Whittaker MIT 76-247 Commercial versus public GO tools
4/12 12p Laurent Gautier
Center for Biological Sequence Analysis, Denmark 		MIT 76-259 R-Python Interface
http://www.cbs.dtu.dk/index.shtml
4/26 12p Michael Reich
Broad Institute 		MIT 68-151 GenePattern Enhancements
5/17 12p Mark Borowsky MGH Simches 5 / Darwin Schneeberger et al., 2009 NatureMethods
6/7 12p Brad Chapman MIT 68-151 BioPython
6/28 12p Ruslan Sadreyev MIT 76-659 Teaching Statistics
7/12 12p Kip Bodi MIT 68-121 Data analysis for DSRG / ABRF
7/26 12p Toshiro Ohsumi MGH TBA
8/23 12p Lakshmanan Iyer Tufts Medical RNAseq Analysis
9/15 (Thursday) 12p Brad Chapman MIT 76-558 distributed exome analysis pipeline slides
10/6 (Thursday) 12p Stuart Levine MIT 68-274 Comparison of ChIP-seq algorithms
10/27 (Thursday) 12p Pablo Pareja MIT 76-258 Bio4j Graph based analysis and visualization slides
11/?? (Thursday) 12p Paola Favaretto MIT RNAseq - part I
12/15 12p Charlie Whittaker MIT RNAseq - part II


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