BioMicroCenter:BioinfoClasses: Difference between revisions

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  |Mon Dec 14, 2015  
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  |2pm-3pm
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  |Duanduan Ma
  |Duanduan Ma
  |Building 68
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               A Traveler's companion to RNA-Seq interpretation
               Introduction to UNIX and the KI/BioMicro computational resources.
                                Monday, Nov 9
                            Monday, December 14, 2015
                                1:30-3:30 PM
                              2:00-4:00 PM
                                68-181
                                  68-474


This session will go over the basics of RNA-Seq, including library preparation strategies and sequencing and their implications for downstream data analyses, sample and run quality control metrics, basics of RNA-Seq data processing and brief discussions of RNA-Seq-specific applications (e.g. RNA processing  and variation calls/ allele-specific expression).
This hands-on session will introduce researchers to the computational resources offered by the BioMicro Center/KI Bioinforamtics and Computing core facility. The topics will include tips for using our storage resources, instruction on the Linux operating system installed on our cluster and an introduction to the job manage software that controls the cluster workload. Attendance is strongly recommended if you are planning to start using the cluster.
 
Please contact Duan Ma (duan@mit.edu) to sign up and ensure that you have the necessary accounts to participate in the session. Registration will close at 5pm on Thursday, December 10th 2015.

Revision as of 08:19, 7 December 2015

Teaching Schedule

DATE TIME Instructor Location Room Topic
Mon May 11, 2015 2pm-3pm Duanduan Ma Building 76 76-156a&b Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 15, 2015 1:30pm-3pm Duanduan Ma Building 68 68-374 Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources
Mon Jul 13, 2015 10am-11am Charlie Whittaker Building 76 76-156a&b Introduction to Spotfire
Mon Aug 10, 2015 1:30pm-3pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 14, 2015 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon Oct 19, 2015 1pm-4pm Duanduan Ma Building 68 68-674 Introduction to Python
Mon Nov 9, 2015 1:30pm-3:30pm Jie Wu and Vincent Butty Building 68 68-181 A Traveller's companion to RNA-Seq interpretation 
 QC slides[1] methods slides [2]
Mon Dec 14, 2015 2pm-4pm Duanduan Ma Building 68 68-474 Introduction to UNIX and the KI/BioMicro computational resources 
             Introduction to UNIX and the KI/BioMicro computational resources.
                           Monday, December 14, 2015
                              2:00-4:00 PM
                                 68-474

This hands-on session will introduce researchers to the computational resources offered by the BioMicro Center/KI Bioinforamtics and Computing core facility. The topics will include tips for using our storage resources, instruction on the Linux operating system installed on our cluster and an introduction to the job manage software that controls the cluster workload. Attendance is strongly recommended if you are planning to start using the cluster.

Please contact Duan Ma (duan@mit.edu) to sign up and ensure that you have the necessary accounts to participate in the session. Registration will close at 5pm on Thursday, December 10th 2015.

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