BioMicroCenter:BioinfoClasses: Difference between revisions

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Introduction to UNIX and the KI/BioMicro computational resources.
RNA-Seq Design and Analysis : a two-session class on RNA-Seq experimental design and data interpretation
                            Tuesday, Oct 18, 2016
                              1:00-3:00 PM
                                  68-274


This hands-on session will introduce researchers to the computational resources offered by the BioMicro Center/KI Bioinformatics and Computing core facility. The topics will include tips for using our storage resources, instruction on the Linux operating system installed on our cluster and an introduction to the job manage software that controls the cluster workload. Attendance is strongly recommended if you are planning to start using the cluster.
Monday, November 7 2015:    1-2PM Room 68-181
 
This first session will go over the basics of RNA-Seq experimental design, including library preparation strategies and sequencing and their implications for downstream data analyses and sample and run quality control metrics.
 
Monday, November 14 2015:  1-2PM Room 68-181
 
This second session will cover the basics of RNA-Seq data processing, differential expression analysis, and brief discussions of RNA-Seq-specific applications (e.g. RNA processing  and variation calls/ allele-specific expression).


Please contact Duan Ma (duan@mit.edu) to sign up and ensure that you have the necessary accounts to participate in the session. Registration will close at 5pm on Friday, October 14th 2016.
Please contact Duan Ma (duan@mit.edu) to sign up and ensure that you have the necessary accounts to participate in the session. Registration will close at 5pm on Friday, October 14th 2016.

Revision as of 15:46, 1 November 2016

Teaching Schedule

DATE TIME Instructor Location Room Topic
Mon May 11, 2015 2pm-3pm Duanduan Ma Building 76 76-156a&b Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 15, 2015 1:30pm-3pm Duanduan Ma Building 68 68-374 Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources
Mon Jul 13, 2015 10am-11am Charlie Whittaker Building 76 76-156a&b Introduction to Spotfire
Mon Aug 10, 2015 1:30pm-3pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 14, 2015 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon Oct 19, 2015 1pm-4pm Duanduan Ma Building 68 68-674 Introduction to Python
Mon Nov 9, 2015 1:30pm-3:30pm Jie Wu and Vincent Butty Building 68 68-181 A Traveller's companion to RNA-Seq interpretation 
 QC slides[1] methods slides [2]
Mon Dec 14, 2015 2pm-4pm Duanduan Ma Building 68 68-474 Introduction to UNIX and the KI/BioMicro computational resources
Thur Jan 7, 2016 1:30pm-4:30pm Duanduan Ma Building 32 32-124 Quantitative Biology Workshop Outreach-Introduction to Python
Fri Jan 29, 2016 9:00am-11:00am Charlie Whittaker and Duanduan Ma Building 14N (DIRC) 14N-132 Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases
Tue Feb 16, 2016 2:00am-3:00am Sara Strandberg-Qlucore Building 76 76-156B Introduction to Qlucore software
Mon Mar 7, 2016 2pm-4pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon April 11, 2016 1pm-4pm Duanduan Ma Building 68 68-121 Introduction to R
Mon May 2, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon May 9, 2016 1pm-3pm Qlucore Building 14N(DIRC) 14N-132 Hands on training of Qlucore software
Mon June 6, 2016 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 13, 2016 1pm-4pm Duanduan Ma Building 76 76-156A/B Introduction to R
Mon July 11, 2016 1pm-4pm Duanduan Ma Building 56 56-602 Introduction to R
Mon Aug 8, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon Sep 12, 2016 2pm-4pm Duanduan Ma Building 76 76-459 Introduction to UNIX and the KI/BioMicro computational resources
Tue Oct 18, 2016 1pm-3pm Duanduan Ma Building 68 68-274 Introduction to UNIX and the KI/BioMicro computational resources
Mon Nov 7, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1
Mon Nov 14, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2
Mon Dec 12, 2016 2pm-4pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources


RNA-Seq Design and Analysis : a two-session class on RNA-Seq experimental design and data interpretation

Monday, November 7 2015: 1-2PM Room 68-181

This first session will go over the basics of RNA-Seq experimental design, including library preparation strategies and sequencing and their implications for downstream data analyses and sample and run quality control metrics.

Monday, November 14 2015: 1-2PM Room 68-181

This second session will cover the basics of RNA-Seq data processing, differential expression analysis, and brief discussions of RNA-Seq-specific applications (e.g. RNA processing and variation calls/ allele-specific expression).

Please contact Duan Ma (duan@mit.edu) to sign up and ensure that you have the necessary accounts to participate in the session. Registration will close at 5pm on Friday, October 14th 2016.

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