BioSysBio:Conference Programme With Videos: Difference between revisions
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==Programme: Thursday 11th Jan== | ==Programme: Thursday 11th Jan== | ||
===Kick-off=== | ===Kick-off=== | ||
*12.00 – 13.00 Registration | *12.00 – 13.00 '''Registration''' | ||
*13.00 – 13.15 Opening and welcome | *13.00 – 13.15 '''Opening and welcome''' | ||
===Opening plenary speakers:=== | ===Opening plenary speakers:=== | ||
*13.15 – 14.00 Hans Westerhoff - University of Manchester - | *13.15 – 14.00 '''Hans Westerhoff''' - University of Manchester - | ||
**"Systems Biology, hierarchies and robustness: bringing information to Life". | **"Systems Biology, hierarchies and robustness: bringing information to Life". | ||
*14.00– 14.45 Alfonso Valencia - Universidad Autonoma Madrid - | *14.00– 14.45 '''Alfonso Valencia''' - Universidad Autonoma Madrid - | ||
*14.45 – 15.15 Refreshments | *14.45 – 15.15 Refreshments | ||
===Session 1: Gene regulation and profiling=== | ===Session 1: Gene regulation and profiling=== | ||
*15.15 - 15.55 Roland Eils - DKFZ (German Cancer Research Centre) - | *15.15 - 15.55 '''Roland Eils''' - DKFZ (German Cancer Research Centre) - | ||
**"Network based microarray data analysis". | **"Network based microarray data analysis". | ||
*15.55 - 16.20 Martino Barenco - Institute of Child Health UCL (University College London) - | *15.55 - 16.20 '''Martino Barenco''' - Institute of Child Health UCL (University College London) - | ||
**"rHVDM – A fast and user-friendly R package to predict transcription factor targets from microarray time series data." | **"rHVDM – A fast and user-friendly R package to predict transcription factor targets from microarray time series data." | ||
*16.20 - 16.45 Alok Mishra - Imperial College London - | *16.20 - 16.45 '''Alok Mishra''' - Imperial College London - | ||
**"Effect of microarray data heterogeneity on gene regulatory module discovery" | **"Effect of microarray data heterogeneity on gene regulatory module discovery" | ||
*18.00 – 21.00 Industry Partnership Fair and Welcome party sponsored by the Doctoral Training Centre | *18.00 – 21.00 Industry Partnership Fair and Welcome party sponsored by the Doctoral Training Centre | ||
Programme: Friday 12th Jan | ==Programme: Friday 12th Jan== | ||
Session 2: | ===Session 2: Metabolomics and machine learning: quantitative bioanalysis for systems biology=== | ||
08.00 - 8.45: Breakfast | *08.00 - 8.45: Breakfast | ||
08.45– 09.25 Douglas Kell - University of Manchester, UK | *08.45– 09.25 '''Douglas Kell''' - University of Manchester, UK | ||
09.25 - 09.50 Raul Munoz Hernandez - University of Manchester, UK | *09.25 - 09.50 '''Raul Munoz Hernandez''' - University of Manchester, UK | ||
Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, cda, by streptomyces coelicolor | **"Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, cda, by streptomyces coelicolor" | ||
09.50 - 10.15 Daniel Mateus - CEA/List Saclay, France | *09.50 - 10.15 '''Daniel Mateus''' - CEA/List Saclay, France | ||
Modeling Genetic Regulatory Networks from specified behaviors | **"Modeling Genetic Regulatory Networks from specified behaviors." | ||
10.15– 11.45 Break & poster session 1 | 10.15– 11.45 Break & poster session 1 | ||
Session 3: | ===Session 3: Synthetic Biology and iGEM.=== | ||
11.45– 12.15 Randy Rettberg - MIT (Massachusetts Institute of Technology), USA | *11.45– 12.15 '''Randy Rettberg''' - MIT (Massachusetts Institute of Technology), USA | ||
12.15– 12.35 University of Edinburgh iGEM , UK | *12.15– 12.35 '''University of Edinburgh iGEM''' , UK | ||
Modeling Arsenic Biosensor System | **"Modeling Arsenic Biosensor System" | ||
12.35– 12.55 iGEM Imperial College London | *12.35– 12.55 '''iGEM Imperial College London''' | ||
Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic. | **"Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic." | ||
12.55– 13.15 University of Cambridge iGEM team, UK | *12.55– 13.15 '''University of Cambridge iGEM team''', UK | ||
Autonomous pattern formation between bacterial populations | **Autonomous pattern formation between bacterial populations | ||
13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007? | 13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007? | ||
Session 4: | |||
14.15– 14.55 Nicolas Le Novere - European Bioinformatics Institute, UK | ===Session 4: Modeling and databases in systems Biology.=== | ||
14.55– 15.20 Michael Lees - University of Nottingham | *14.15– 14.55 '''Nicolas Le Novere''' - European Bioinformatics Institute, UK | ||
BacGrid: Simulations of Bacteria using the GRID | *14.55– 15.20 '''Michael Lees''' - University of Nottingham | ||
15.20– 15.45 Isabel Rojas - EML Research gGmbH, Heidelberg, Germany | **"BacGrid: Simulations of Bacteria using the GRID" | ||
SABIO-RK: a database of biochemical reactions and their kinetics | *15.20– 15.45''' Isabel Rojas''' - EML Research gGmbH, Heidelberg, Germany | ||
"SABIO-RK: a database of biochemical reactions and their kinetics." | |||
15.45– 17.15 Break & poster session 2 | 15.45– 17.15 Break & poster session 2 | ||
Session 5: | ===Session 5: Modeling and modularity, tools for systems biology.=== | ||
17.15– 17.55 Herbert Sauro - University of Washington, USA | *17.15– 17.55 '''Herbert Sauro''' - University of Washington, USA | ||
17.55– 18.20 Martin Hemberg - Imperial College London | *17.55– 18.20 '''Martin Hemberg''' - Imperial College London | ||
A study of the properties of stochastic genetic oscillators | **"A study of the properties of stochastic genetic oscillators" | ||
18.20– 18.45 Nuno Lages - Faculty of Sciences of the University of Lisbon | *18.20– 18.45 '''Nuno Lages''' - Faculty of Sciences of the University of Lisbon | ||
Potential role of the glyoxalase pathway as a drug target in L infantum | **"Potential role of the glyoxalase pathway as a drug target in L infantum." | ||
20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group. | 20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group. | ||
Session 7: Synthetic Biology | ==Programme: Saturday 13th Jan== | ||
10.45– 11.25 Chris Voigt - UCSD (University of California, San Diego) USA | *08.00 - 8.45: Breakfast | ||
11.25– 11.50 James Brown - Univeristy of Cambridge | ===Session 6: Gene regulatory networks, Structural and Computational Genomics.=== | ||
Navigational Control of Bacteria | *08.45– 09.25 '''Sarah Teichmann''' - Laboratory of Molecular Biology, Cambridge, UK | ||
11.50– 12.15 Alfonso Jaramillo - Ecole Polytechnique, France | *09.25– 09.50 '''Sanne Abeln''' - University of Oxford | ||
Computational Design of Proteins With New Functions | **"Linking evolution of protein structures through fragments." | ||
12.15– 13.00 Closing Plenary: Ron Weiss - Princeton University | *09.50– 10.15 '''Emily Jefferson''' - University of Dundee | ||
Developments in Synthetic Biology | **"The relationship between domain-domain interaction orientation and sequence similarity" | ||
13.00– 13.15 Prize giving and conference close | *10.15– 10.45 Refreshments break | ||
===Session 7: Synthetic Biology=== | |||
*10.45– 11.25 '''Chris Voigt''' - UCSD (University of California, San Diego) USA | |||
*11.25– 11.50 '''James Brown''' - Univeristy of Cambridge | |||
**"Navigational Control of Bacteria" | |||
*11.50– 12.15 '''Alfonso Jaramillo''' - Ecole Polytechnique, France | |||
**"Computational Design of Proteins With New Functions" | |||
*12.15– 13.00 Closing Plenary: '''Ron Weiss''' - Princeton University | |||
**"Developments in Synthetic Biology" | |||
*13.00– 13.15 Prize giving and conference close |
Revision as of 11:34, 11 January 2007
BioSysBio, 11th-13th January 2007, Manchester, UK.
Programme: Thursday 11th Jan
Kick-off
- 12.00 – 13.00 Registration
- 13.00 – 13.15 Opening and welcome
Opening plenary speakers:
- 13.15 – 14.00 Hans Westerhoff - University of Manchester -
- "Systems Biology, hierarchies and robustness: bringing information to Life".
- 14.00– 14.45 Alfonso Valencia - Universidad Autonoma Madrid -
- 14.45 – 15.15 Refreshments
Session 1: Gene regulation and profiling
- 15.15 - 15.55 Roland Eils - DKFZ (German Cancer Research Centre) -
- "Network based microarray data analysis".
- 15.55 - 16.20 Martino Barenco - Institute of Child Health UCL (University College London) -
- "rHVDM – A fast and user-friendly R package to predict transcription factor targets from microarray time series data."
- 16.20 - 16.45 Alok Mishra - Imperial College London -
- "Effect of microarray data heterogeneity on gene regulatory module discovery"
- 18.00 – 21.00 Industry Partnership Fair and Welcome party sponsored by the Doctoral Training Centre
Programme: Friday 12th Jan
Session 2: Metabolomics and machine learning: quantitative bioanalysis for systems biology
- 08.00 - 8.45: Breakfast
- 08.45– 09.25 Douglas Kell - University of Manchester, UK
- 09.25 - 09.50 Raul Munoz Hernandez - University of Manchester, UK
- "Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, cda, by streptomyces coelicolor"
- 09.50 - 10.15 Daniel Mateus - CEA/List Saclay, France
- "Modeling Genetic Regulatory Networks from specified behaviors."
10.15– 11.45 Break & poster session 1
Session 3: Synthetic Biology and iGEM.
- 11.45– 12.15 Randy Rettberg - MIT (Massachusetts Institute of Technology), USA
- 12.15– 12.35 University of Edinburgh iGEM , UK
- "Modeling Arsenic Biosensor System"
- 12.35– 12.55 iGEM Imperial College London
- "Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic."
- 12.55– 13.15 University of Cambridge iGEM team, UK
- Autonomous pattern formation between bacterial populations
13.15– 14.15 Lunch + iGEM workshop - What do I need to do to take part in iGEM 2007?
Session 4: Modeling and databases in systems Biology.
- 14.15– 14.55 Nicolas Le Novere - European Bioinformatics Institute, UK
- 14.55– 15.20 Michael Lees - University of Nottingham
- "BacGrid: Simulations of Bacteria using the GRID"
- 15.20– 15.45 Isabel Rojas - EML Research gGmbH, Heidelberg, Germany
"SABIO-RK: a database of biochemical reactions and their kinetics."
15.45– 17.15 Break & poster session 2
Session 5: Modeling and modularity, tools for systems biology.
- 17.15– 17.55 Herbert Sauro - University of Washington, USA
- 17.55– 18.20 Martin Hemberg - Imperial College London
- "A study of the properties of stochastic genetic oscillators"
- 18.20– 18.45 Nuno Lages - Faculty of Sciences of the University of Lisbon
- "Potential role of the glyoxalase pathway as a drug target in L infantum."
20.00– onwards, Conference meal at Tai Wu, Manchester- sponsored by Chemical Computing Group.
Programme: Saturday 13th Jan
- 08.00 - 8.45: Breakfast
Session 6: Gene regulatory networks, Structural and Computational Genomics.
- 08.45– 09.25 Sarah Teichmann - Laboratory of Molecular Biology, Cambridge, UK
- 09.25– 09.50 Sanne Abeln - University of Oxford
- "Linking evolution of protein structures through fragments."
- 09.50– 10.15 Emily Jefferson - University of Dundee
- "The relationship between domain-domain interaction orientation and sequence similarity"
- 10.15– 10.45 Refreshments break
Session 7: Synthetic Biology
- 10.45– 11.25 Chris Voigt - UCSD (University of California, San Diego) USA
- 11.25– 11.50 James Brown - Univeristy of Cambridge
- "Navigational Control of Bacteria"
- 11.50– 12.15 Alfonso Jaramillo - Ecole Polytechnique, France
- "Computational Design of Proteins With New Functions"
- 12.15– 13.00 Closing Plenary: Ron Weiss - Princeton University
- "Developments in Synthetic Biology"
- 13.00– 13.15 Prize giving and conference close