Bioinformatics: Difference between revisions
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====Databases==== | ====Databases==== | ||
*[http://expasy.org/ ExPASy Proteomics Server] is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE | *[http://expasy.org/ ExPASy Proteomics Server] is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE | ||
*[http://www.uniprot.org/ UniProt (Universal Protein Resource)] is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR | |||
*[http://dip.doe-mbi.ucla.edu/ DIP] catalogs experimentally determined interactions between proteins, it combines information from a variety of sources to create a single, consistent set of protein-protein interactions |
Revision as of 10:56, 8 September 2006
Bioinformatics Discussion Group
Software
- PFAAT - Protein Family Alignment Annotation Tool
Frameworks
- BioCocoa is an open source Cocoa framework for bioinformatics written in Objective-C
Online services
- Biological web services - Taverna Project
- WebLogo - create sequence logos
- T-COFFEE server
- MAFFT: A Program for Multiple Sequence Alignment
- Block WWW Server
- Regulatory Sequence Analysis Tools (RSAT) provide a series of modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences
- GeneDesign β2.0
Databases
- ExPASy Proteomics Server is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE
- UniProt (Universal Protein Resource) is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR
- DIP catalogs experimentally determined interactions between proteins, it combines information from a variety of sources to create a single, consistent set of protein-protein interactions