Bioinformatics of S-layer Proteins

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Current revision (13:19, 5 August 2005) (view source)
(SbpA)
 
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Sections preceded with an R, are currently in progress and not yet complete
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==SbpA==
==SbpA==
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[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
# '''Number of amino acids:''' 1268
# '''Number of amino acids:''' 1268
-
# [[Amino Acid Composition]]
+
# [[SbpA Amino Acid Composition]]
# '''Total number of negatively charged residues (Asp + Glu):''' 122
# '''Total number of negatively charged residues (Asp + Glu):''' 122
# '''Total number of positively charged residues (Arg + Lys):''' 91
# '''Total number of positively charged residues (Arg + Lys):''' 91
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# [[Atomic composition:]]
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# [[SbpA Atomic composition:]]
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# [[Extinction coefficients]]
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# [[SbpA Extinction coefficients]]
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# [[Other Parameters]]
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# [[SbpA Other Parameters]]
[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
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[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]
[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]
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[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils  ]]
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R(add raw data) [http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils  ]]
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[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils ]]
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R(add raw data) [http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils ]]
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[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]
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R(add raw data) [http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]
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[[Colored Protein]]
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==SbsB==
==SbsB==
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[[SbsB Protein Sequence]] - CAA66724.1
[[SbsB Protein Sequence]] - CAA66724.1
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&qty=1&c_start=1&list_uids=6665712&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA protein]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&qty=1&c_start=1&list_uids=1418404&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA SbsB protein]
[[SbsB DNA Sequence]]   
[[SbsB DNA Sequence]]   
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids=6665711&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA DNA]
+
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids=1418403&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA sbsB DNA]
[http://ca.expasy.org/tools/pi_tool.html Compute pI/MW tool] '''Theoretical pI/Mw''': 5.21 / 97916.32  
[http://ca.expasy.org/tools/pi_tool.html Compute pI/MW tool] '''Theoretical pI/Mw''': 5.21 / 97916.32  
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R[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
R[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
# '''Number of amino acids:''' 920
# '''Number of amino acids:''' 920
-
# [[Amino Acid Composition]]
+
# [[SbsB Amino Acid Composition]]
# '''Total number of negatively charged residues (Asp + Glu):''' 109
# '''Total number of negatively charged residues (Asp + Glu):''' 109
# '''Total number of positively charged residues (Arg + Lys):''' 97
# '''Total number of positively charged residues (Arg + Lys):''' 97
-
# [[Atomic composition:]]
+
# [[SbsB Atomic composition:]]
-
# [[Extinction coefficients]]
+
# [[SbsB Extinction coefficients]]
-
# [[Other Parameters]]
+
# [[SbsB Other Parameters]]
R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
-
R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]
+
R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[SbsB Statistical Analysis of Protein Sequence]]
-
[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils  ]]
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[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[SbsB Coiled Coils  ]]
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[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils ]]
+
[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[SbsB Coiled Coils from Paircoils ]]
-
[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]
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[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[SbsB Coiled Coils that may be dimeric or trimeric]]
==Sap==
==Sap==
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R[[SbsB DNA Sequence]]   
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R[[Sap DNA Sequence]]   
R[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids=6665711&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA DNA]
R[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids=6665711&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA DNA]
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R[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
R[http://ca.expasy.org/tools/protparam.html ProtParam tool]  Physico-chemical parameters:
# '''Number of amino acids:''' 920
# '''Number of amino acids:''' 920
-
# [[Amino Acid Composition]]
+
# [[Sap Amino Acid Composition]]
# '''Total number of negatively charged residues (Asp + Glu):''' 109
# '''Total number of negatively charged residues (Asp + Glu):''' 109
# '''Total number of positively charged residues (Arg + Lys):''' 97
# '''Total number of positively charged residues (Arg + Lys):''' 97
-
# [[Atomic composition:]]
+
# [[Sap Atomic composition:]]
-
# [[Extinction coefficients]]
+
# [[Sap Extinction coefficients]]
-
# [[Other Parameters]]
+
# [[Sap Other Parameters]]
R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
R[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected
-
R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]
+
R[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Sap Statistical Analysis of Protein Sequence]]
-
R[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils]]
+
R[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Sap Coiled Coils]]
-
R[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils]]
+
R[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Sap Coiled Coils from Paircoils]]
-
R[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]
+
R[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Sap Coiled Coils that may be dimeric or trimeric]]
[[Category:Project]]
[[Category:Project]]

Current revision

Sections preceded with an R, are currently in progress and not yet complete

SbpA

SbpA Protein Sequence - AAF22978

FASTA protein


SbpA DNA Sequence

FASTA DNA

Compute pI/MW tool Theoretical pI/Mw: 4.80 / 132046.80

ProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 1268
  2. SbpA Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 122
  4. Total number of positively charged residues (Arg + Lys): 91
  5. SbpA Atomic composition:
  6. SbpA Extinction coefficients
  7. SbpA Other Parameters

REP No repeat detected

SAPS Statistical Analysis of Protein Sequence

R(add raw data) COILS Coiled Coils

R(add raw data) Paircoil Scoring Form Coiled Coils from Paircoils

R(add raw data) MultiCoil Scoring Form Coiled Coils that may dimeric or trimeric

SbsB

SbsB Protein Sequence - CAA66724.1

FASTA SbsB protein


SbsB DNA Sequence

FASTA sbsB DNA

Compute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32

RProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 920
  2. SbsB Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 109
  4. Total number of positively charged residues (Arg + Lys): 97
  5. SbsB Atomic composition:
  6. SbsB Extinction coefficients
  7. SbsB Other Parameters

RREP No repeat detected

RSAPS SbsB Statistical Analysis of Protein Sequence

COILS SbsB Coiled Coils

Paircoil Scoring Form SbsB Coiled Coils from Paircoils

MultiCoil Scoring Form SbsB Coiled Coils that may be dimeric or trimeric

Sap

Sap Protein Sequence - P49051

RFASTA protein


RSap DNA Sequence

RFASTA DNA

RCompute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32

RProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 920
  2. Sap Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 109
  4. Total number of positively charged residues (Arg + Lys): 97
  5. Sap Atomic composition:
  6. Sap Extinction coefficients
  7. Sap Other Parameters

RREP No repeat detected

RSAPS Sap Statistical Analysis of Protein Sequence

RCOILS Sap Coiled Coils

RPaircoil Scoring Form Sap Coiled Coils from Paircoils

RMultiCoil Scoring Form Sap Coiled Coils that may be dimeric or trimeric

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