Bioinformatics of S-layer Proteins: Difference between revisions
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Sections preceded with an R, are currently in progress and not yet complete | |||
==SbpA== | ==SbpA== | ||
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[http://ca.expasy.org/tools/protparam.html ProtParam tool] Physico-chemical parameters: | [http://ca.expasy.org/tools/protparam.html ProtParam tool] Physico-chemical parameters: | ||
# '''Number of amino acids:''' 1268 | # '''Number of amino acids:''' 1268 | ||
# [[Amino Acid Composition]] | # [[SbpA Amino Acid Composition]] | ||
# '''Total number of negatively charged residues (Asp + Glu):''' 122 | # '''Total number of negatively charged residues (Asp + Glu):''' 122 | ||
# '''Total number of positively charged residues (Arg + Lys):''' 91 | # '''Total number of positively charged residues (Arg + Lys):''' 91 | ||
# [[Atomic composition:]] | # [[SbpA Atomic composition:]] | ||
# [[Extinction coefficients]] | # [[SbpA Extinction coefficients]] | ||
# [[Other Parameters]] | # [[SbpA Other Parameters]] | ||
[http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected | [http://www.embl-heidelberg.de/~andrade/papers/rep/search.html REP] No repeat detected | ||
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[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS] [[Statistical Analysis of Protein Sequence]] | [http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS] [[Statistical Analysis of Protein Sequence]] | ||
[http://www.ch.embnet.org/software/COILS_form.html COILS] [[Coiled Coils | R(add raw data) [http://www.ch.embnet.org/software/COILS_form.html COILS] [[Coiled Coils ]] | ||
[http:// | R(add raw data) [http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[Coiled Coils from Paircoils ]] | ||
[[ | R(add raw data) [http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]] | ||
==SbsB== | ==SbsB== | ||
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[[SbsB Protein Sequence]] - CAA66724.1 | [[SbsB Protein Sequence]] - CAA66724.1 | ||
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&qty=1&c_start=1&list_uids= | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&qty=1&c_start=1&list_uids=1418404&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA SbsB protein] | ||
[[SbsB DNA Sequence]] | [[SbsB DNA Sequence]] | ||
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids= | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&list_uids=1418403&dopt=fasta&sendto=on&from=begin&to=end&extrafeatpresent=1&ef_MGC=16 FASTA sbsB DNA] | ||
[http://ca.expasy.org/tools/pi_tool.html Compute pI/MW tool] '''Theoretical pI/Mw''': 5.21 / 97916.32 | [http://ca.expasy.org/tools/pi_tool.html Compute pI/MW tool] '''Theoretical pI/Mw''': 5.21 / 97916.32 | ||
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[http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[SbsB Coiled Coils from Paircoils ]] | [http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[SbsB Coiled Coils from Paircoils ]] | ||
[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[SbsB Coiled Coils that may dimeric or trimeric]] | [http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[SbsB Coiled Coils that may be dimeric or trimeric]] | ||
==Sap== | ==Sap== | ||
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R[http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[Sap Coiled Coils from Paircoils]] | R[http://paircoil.lcs.mit.edu/cgi-bin/paircoil Paircoil Scoring Form] [[Sap Coiled Coils from Paircoils]] | ||
R[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Sap Coiled Coils that may dimeric or trimeric]] | R[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Sap Coiled Coils that may be dimeric or trimeric]] | ||
[[Category:Project]] | [[Category:Project]] | ||
Latest revision as of 10:19, 5 August 2005
Sections preceded with an R, are currently in progress and not yet complete
SbpA
SbpA Protein Sequence - AAF22978
Compute pI/MW tool Theoretical pI/Mw: 4.80 / 132046.80
ProtParam tool Physico-chemical parameters:
- Number of amino acids: 1268
- SbpA Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 122
- Total number of positively charged residues (Arg + Lys): 91
- SbpA Atomic composition:
- SbpA Extinction coefficients
- SbpA Other Parameters
REP No repeat detected
SAPS Statistical Analysis of Protein Sequence
R(add raw data) COILS Coiled Coils
R(add raw data) Paircoil Scoring Form Coiled Coils from Paircoils
R(add raw data) MultiCoil Scoring Form Coiled Coils that may dimeric or trimeric
SbsB
SbsB Protein Sequence - CAA66724.1
Compute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32
RProtParam tool Physico-chemical parameters:
- Number of amino acids: 920
- SbsB Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 109
- Total number of positively charged residues (Arg + Lys): 97
- SbsB Atomic composition:
- SbsB Extinction coefficients
- SbsB Other Parameters
RREP No repeat detected
RSAPS SbsB Statistical Analysis of Protein Sequence
Paircoil Scoring Form SbsB Coiled Coils from Paircoils
MultiCoil Scoring Form SbsB Coiled Coils that may be dimeric or trimeric
Sap
Sap Protein Sequence - P49051
RCompute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32
RProtParam tool Physico-chemical parameters:
- Number of amino acids: 920
- Sap Amino Acid Composition
- Total number of negatively charged residues (Asp + Glu): 109
- Total number of positively charged residues (Arg + Lys): 97
- Sap Atomic composition:
- Sap Extinction coefficients
- Sap Other Parameters
RREP No repeat detected
RSAPS Sap Statistical Analysis of Protein Sequence
RPaircoil Scoring Form Sap Coiled Coils from Paircoils
RMultiCoil Scoring Form Sap Coiled Coils that may be dimeric or trimeric
