Bioinformatics of S-layer Proteins: Difference between revisions

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[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]
[http://www.isrec.isb-sib.ch/software/SAPS_form.html SAPS]  [[Statistical Analysis of Protein Sequence]]


R[http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils  ]]
R(add raw data) [http://www.ch.embnet.org/software/COILS_form.html COILS]  [[Coiled Coils  ]]


R[http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils ]]
R(add raw data) [http://paircoil.lcs.mit.edu/cgi-bin/paircoil  Paircoil Scoring Form]  [[Coiled Coils from Paircoils ]]


R[http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]
R(add raw data) [http://multicoil.lcs.mit.edu/cgi-bin/multicoil MultiCoil Scoring Form] [[Coiled Coils that may dimeric or trimeric]]


==SbsB==
==SbsB==

Revision as of 09:58, 5 August 2005

Sections preceded with an R, are currently in progress and not yet complete

SbpA

SbpA Protein Sequence - AAF22978

FASTA protein


SbpA DNA Sequence

FASTA DNA

Compute pI/MW tool Theoretical pI/Mw: 4.80 / 132046.80

ProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 1268
  2. Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 122
  4. Total number of positively charged residues (Arg + Lys): 91
  5. Atomic composition:
  6. Extinction coefficients
  7. Other Parameters

REP No repeat detected

SAPS Statistical Analysis of Protein Sequence

R(add raw data) COILS Coiled Coils

R(add raw data) Paircoil Scoring Form Coiled Coils from Paircoils

R(add raw data) MultiCoil Scoring Form Coiled Coils that may dimeric or trimeric

SbsB

SbsB Protein Sequence - CAA66724.1

FASTA protein


SbsB DNA Sequence

FASTA DNA

Compute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32

RProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 920
  2. SbsB Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 109
  4. Total number of positively charged residues (Arg + Lys): 97
  5. SbsB Atomic composition:
  6. SbsB Extinction coefficients
  7. SbsB Other Parameters

RREP No repeat detected

RSAPS SbsB Statistical Analysis of Protein Sequence

COILS SbsB Coiled Coils

Paircoil Scoring Form SbsB Coiled Coils from Paircoils

MultiCoil Scoring Form SbsB Coiled Coils that may be dimeric or trimeric

Sap

Sap Protein Sequence - P49051

RFASTA protein


RSap DNA Sequence

RFASTA DNA

RCompute pI/MW tool Theoretical pI/Mw: 5.21 / 97916.32

RProtParam tool Physico-chemical parameters:

  1. Number of amino acids: 920
  2. Sap Amino Acid Composition
  3. Total number of negatively charged residues (Asp + Glu): 109
  4. Total number of positively charged residues (Arg + Lys): 97
  5. Sap Atomic composition:
  6. Sap Extinction coefficients
  7. Sap Other Parameters

RREP No repeat detected

RSAPS Sap Statistical Analysis of Protein Sequence

RCOILS Sap Coiled Coils

RPaircoil Scoring Form Sap Coiled Coils from Paircoils

RMultiCoil Scoring Form Sap Coiled Coils that may be dimeric or trimeric

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