Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/Literature: Difference between revisions

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==This is section==
==Bibliography==
text in section
 
[1] J. D. Watson and F. H. C. Crick. Molecular structure of nucleic acids. Nature,
171(11):96–98, 1953.
 
[2] Alexander Rich. Discovery of the hybrid helix and the first DNA-RNA hybridization.
The Journal of biological chemistry, 281(12):7693–6, March 2006.
 
[3] Jeremy M. Berg, John L. Tymoczko, and Lubert Stryer. Biochemistry. W. H.
Freeman and Company, New York, 6th edition, 2006.
 
[4] Peter Yakovchuk, Ekaterina Protozanova, and Maxim D Frank-Kamenetskii.
Base-stacking and base-pairing contributions into thermal stability of the
DNA double helix. Nucleic acids research, 34(2):564–74, January 2006.
 
[5] J. Marmur and P. Doty. Determination of the base composition of deoxyribonucleic
acid from its thermal denaturation temperature. Journal of Molecular
Biology, 5(1):109–118, 1962.
 
[6] R. B. Wallace, J. Shaffer, R. F. Murphy, J. Bonner, T. Hirose, and K. Itakura.
Hybridization of synthetic oligodeoxyribonucleotides to phi chi 174 DNA: the
effect of single base pair mismatch. Nucleic Acids Research, 6(11):3543–3557,
1979.
 
[7] K. J. Breslauer, R. Frank, H. Blöcker, and L. A. Marky. Predicting DNA duplex
stability from the base sequence. Proceedings of the National Academy of Sciences
of the United States of America, 83(11):3746–50, June 1986.
 
[8] Richard Owczarzy, Bernardo G. Moreira, Yong You, Mark A. Behlke, and
Joseph A. Walder. Predicting stability of DNA duplexes in solutions containing
magnesium and monovalent cations. Biochemistry, 47(19):5336–53, May
2008.
 
[9] N. C. Seeman. Nucleic acid junctions and lattices. Journal of theoretical biology,
99(2):237–47, November 1982.
 
[10] J. Chen and N.C. Seeman. Synthesis from DNA of a molecule with the connectivity
of a cube. Nature, 350(6319):631–633, 1991.
 
[11] E.Winfree, F. Liu, L. A.Wenzler, and N. C. Seeman. Design and self-assembly
of two-dimensional DNA crystals. Nature, 394(6693):539–44, August 1998.
 


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Revision as of 11:24, 2 November 2011

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<ul id="nav">
   <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team">Team</a>
       <ul>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/Mie">Mie</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/Irene">Irene</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/Jens">Jens</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/HansChristian">Hans Christian</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/Steffen">Steffen</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/OompaLoompas">Oompa-Loompas</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Team/Acknowledgements">Acknowledgements</a></li>
       </ul>
   </li>
   <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Idea">Idea</a>
       <ul>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Idea#Idea">Video</a></li>
           <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Idea#Goals">Goals</a></li>
       </ul>
   </li>
   <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project">Project</a>
       <ul>
         <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project#Self-assembly_and_characterization_of_the_structure">Self-assembly of the structure</a></li>
         <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project#Gene_knockdown_using_the_RNAi_pathway">Gen knock-down using the RNAi pathway</a></li>
         <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project#Controlled_opening_of_the_structure">Controlled opening of the structure</a></li>
         <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods">Methods&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;></a>
           <ul>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods#Gel_electrophoresis">Gels electrophoresis</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods#SAXS">SAXS</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods#FRET">FRET</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods#Dicer">Dicer</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Methods#Dual_Luciferace_assay">Dual Luciferase assay</a></li>
           </ul>
         </li>
         <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Project/Abbreviations">Abbreviations</a></li>
       </ul>
   </li>
  <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Overview">Overview</a>
      <ul>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Overview/Goals">Goals</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Overview/Achievements">Achievements</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Overview/FutureWork">Future work</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Overview/Perspectives">Perspectives</a></li>
           </ul>
  </li>
  <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary">Supplementary</a>
     <ul>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/Protocols">Protocols</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/Sequences">Sequences</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/SAXS">SAXS</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/FRET">FRET</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/Luciferase">Luciferase</a></li>
             <li><a href="http://openwetware.org/wiki/Biomod/2011/Aarhus/DanishNanoArtists/Supplementary/Literature">Literature</a></li>
           </ul>
  </li>
</ul>

</body> </html>


Bibliography

[1] J. D. Watson and F. H. C. Crick. Molecular structure of nucleic acids. Nature, 171(11):96–98, 1953.

[2] Alexander Rich. Discovery of the hybrid helix and the first DNA-RNA hybridization. The Journal of biological chemistry, 281(12):7693–6, March 2006.

[3] Jeremy M. Berg, John L. Tymoczko, and Lubert Stryer. Biochemistry. W. H. Freeman and Company, New York, 6th edition, 2006.

[4] Peter Yakovchuk, Ekaterina Protozanova, and Maxim D Frank-Kamenetskii. Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. Nucleic acids research, 34(2):564–74, January 2006.

[5] J. Marmur and P. Doty. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. Journal of Molecular Biology, 5(1):109–118, 1962.

[6] R. B. Wallace, J. Shaffer, R. F. Murphy, J. Bonner, T. Hirose, and K. Itakura. Hybridization of synthetic oligodeoxyribonucleotides to phi chi 174 DNA: the effect of single base pair mismatch. Nucleic Acids Research, 6(11):3543–3557, 1979.

[7] K. J. Breslauer, R. Frank, H. Blöcker, and L. A. Marky. Predicting DNA duplex stability from the base sequence. Proceedings of the National Academy of Sciences of the United States of America, 83(11):3746–50, June 1986.

[8] Richard Owczarzy, Bernardo G. Moreira, Yong You, Mark A. Behlke, and Joseph A. Walder. Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Biochemistry, 47(19):5336–53, May 2008.

[9] N. C. Seeman. Nucleic acid junctions and lattices. Journal of theoretical biology, 99(2):237–47, November 1982.

[10] J. Chen and N.C. Seeman. Synthesis from DNA of a molecule with the connectivity of a cube. Nature, 350(6319):631–633, 1991.

[11] E.Winfree, F. Liu, L. A.Wenzler, and N. C. Seeman. Design and self-assembly of two-dimensional DNA crystals. Nature, 394(6693):539–44, August 1998.



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