Biomod/2011/LMU/FolD'N'Assemble/Protocols
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May
05-13-11(Timon, Alex, Ralf)
We wanted to find the best MgCl concentration and the best annealing time for our construct.
SampleNr. | Annealing time | MgCl(mM) | |
---|---|---|---|
1 | 4h | 10 | |
2 | 4h | 14 | |
3 | 4h | 18 | |
4 | 24h | 10 | |
5 | 24h | 14 | |
6 | 24h | 18 | |
7 | 24h | 14 | dimers(2b) |
8 | 55h | 10 | |
9 | 55h | 14 | |
10 | 55h | 18 |
Then we used electrophoresis in 2% agarose gel to test the samples
05-16-11 (Timon, Alex, Ralf)
Another test for best MgCl concentration and annealing time. We used a 2% agarose gel.
SampleNr. | Annealing time | MgCl(mM) | |
---|---|---|---|
1 | 55h | 16 | |
2 | 55h | 18 | |
3 | 55h | 16 | dimers(2b) |
4 | 55h | 18 | dimers(2b) |
5 | 55h | 16 | dimers(4b) |
6 | 55h | 18 | dimers(4b) |
05-17-11(Timon, Alex, Ralf)
We took first TEM (transmission electron microscope) pictures of our construct.
05-18-11(Timon, Alex, Ralf)
New samples for next week: 200μL, 18mM MgCl, 55h
05-23-11(Timon, Alex, Ralf)
We prepared buffers with different pH.
- pH 4,5
- pH 5
- pH 6
- pH 8
05-24-11(Alex, Ralf, Timon)
- prepared 3 samples of origamis for measuring its stability in a changing pH environment
- exchanged standard buffer with pH adjusted buffer using centrifugal filters
- 3 samples, ~24 h exposure to pH values of 4.5, 5 and 6, 1x TE buffer, 18mM MgCl2