Biomod/2011/UTAustin/Hook'em Hybridizers: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
 
(22 intermediate revisions by 4 users not shown)
Line 2: Line 2:
<style type="text/css">
<style type="text/css">
#outerbox{
#outerbox{
background-image:url( 'http://openwetware.org/images/7/75/Utbiomodbg1.png' );
//background-image:url( 'http://openwetware.org/images/7/75/Utbiomodbg1.png' );
//background-repeat:repeat-x;
background-image: linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);
background-image: -o-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);
background-image: -moz-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);
background-image: -webkit-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);
background-image: -ms-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);
 
background-image: -webkit-gradient(
linear,
left bottom,
left top,
color-stop(0.09, rgb(0,0,0)),
color-stop(0.55, rgb(204,85,0))
);
}
 
.navbox {
position: relative;
float: left;
}
}


Line 9: Line 28:
     display: block;
     display: block;
     width: 200px;
     width: 200px;
     background: url(shad2.png) no-repeat;
    left: -29px;
     -webkit-background-size: 50% 100%;
    top: -20px;
    position: relative;
    padding: 60px 0 60px 0;
    width: 200px;
     background: url( 'http://openwetware.org/images/6/6f/Shad2.png' ) no-repeat;
     background-size: 50% 100%;
}
}


Line 17: Line 41:
}
}


ul#nav li a {
ul#nav a:hover {
    -webkit-transition: all 0.3s ease-out;
    text-decoration: none;
}
}


ul#nav li a {
ul#nav li span {
     -webkit-transition: all 0.3s ease-out;
     -webkit-transition: all 0.3s ease-out;
     background: #cbcbcb url(border.png) no-repeat;
    -moz-transition: all 0.3s ease-out;
    -o-transition: all 0.3s ease-out;
     background: #E07020 url( 'http://openwetware.org/images/4/46/Border.png' ) no-repeat;
     color: #174867;
     color: #174867;
     padding: 7px 15px 7px 15px;
     padding: 7px 15px 7px 15px;
     -webkit-border-top-right-radius: 10px;
     border-top-right-radius: 10px;
     -webkit-border-bottom-right-radius: 10px;
     border-bottom-right-radius: 10px;
     width: 100px;
     width: 100px;
     display: block;
     display: block;
     text-decoration: none;
     text-decoration: none;
     -webkit-box-shadow: 2px 2px 4px #888;
     box-shadow: 2px 2px 4px #BB4400;
}
}


ul.nav li a:hover {
ul#nav li span:hover {
     background: #ebebeb url(border.png) no-repeat;
     background: #F08030 url( 'http://openwetware.org/images/4/46/Border.png' ) no-repeat;
     color: #67a5cd;
     color: #67a5cd;
     padding: 7px 15px 7px 30px;
     padding: 7px 15px 7px 30px;
    display: block;
}
}
</style>
</style>
</head>
</head>
</html>
</html>


<div id="outerbox" style="background-color:#042358; padding-top:10px; padding-bottom:10px;">
<div id="outerbox" style="padding-top:10px; padding-bottom:10px;">


<div id="innerbox" style="width: 800px; padding: 5px; margin: auto; background-color:#ffffff; border-radius: 5px">
<div id="innerbox" style="width: 820px; padding: 15px; margin: auto; background-color:#000000; border-radius: 5px">


<div id="header" style="background-color:#FFFFFF;">
<div id="header" style="background-color:#000000;">
<center>
<center>
[[Image:Ut_longhorn_logo2_png_800x1000_q100.png‎|200px]]
[[Image:UTBiomodBanner2.png|780px]]
<span style="font-size:40px; font-family: Arial; font-weight:bold; color:#CC5500; vertical-align: middle;">The Hook'em Hybridizers</span>
</center>
</center>
</div>
</div>


<div style="padding: 10px; color: #FFFFFF; background-color: #CC5500; width: 130px; height: 800px; float: left;">
<div style="padding: 10px; color: #FFFFFF; background-color: #CC5500; width: 130px; height: 1025px; float: left;">
<div id="navbox">
<ul id="nav">
<ul id="nav">
<li>
<li>
[[Biomod/2011/UTAustin/Hook'em_Hybridizers | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''Home'''</span> ]]
[[Biomod/2011/UTAustin/Hook'em_Hybridizers | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''Home'''</span> ]]
</li>
</li>
<li>
<li>
Line 72: Line 100:
</li>
</li>
<li>
<li>
[[Biomod/2011/UTAustin/Hook'em Hybridizers:People | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''People'''</span> ]]
[[Biomod/2011/UTAustin/Hook'em Hybridizers:Tools | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''Tools'''</span> ]]
</li>
</li>
<li>
<li>
[[Biomod/2011/UTAustin/Hook'em Hybridizers:Contact | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''Contact'''</span> ]]
[[Biomod/2011/UTAustin/Hook'em Hybridizers:People | <span style='font-size:16px; font-family: "trebuchet ms"; font-weight:bold; color:#FFFFFF; vertical-align: middle; text-decoration: none;'>'''People'''</span> ]]
</li>
</li>
</ul>
</ul>
</div>


</div>
</div>


<div style="width: 650px; float: left; padding: 0px">
<div style="width: 650px; float: left; padding: 0px; background-color: #000000;">


<div style="width: 320px; text-align: left; float: left; margin-left: 5px">
<div style="width: 320px; text-align: left; float: left; margin-left: 5px">


<div style="height: 30px; background-color: #3F70C3; padding: 10px 10px 10px;">
<div style="height: 30px; background-color: #3F70C3; padding: 10px 10px 10px;">
<span style="font-size: 20px; font-family: Verdana; color:#FFFFFF; vertical-align: middle;">Team</span>
<span style="font-size: 20px; font-family: Verdana; color:#FFFFFF; vertical-align: middle;">Objective</span>
</div>
</div>


<div style="padding: 10px; background-color:#eeeeee; margin-top: 5px; height: 745px;">
<div style="padding: 10px; background-color:#000000; color: #FFFFFF; margin-top: 5px; height: 345px;">
*Team name: The Hook'em Hybridizers
*Institution: The University of Texas at Austin


*Team Members
<center>'''Counting Events with a DNA Processor'''</center>
**[[User:Ben_Braun|Ben Braun]]
**[[User:Victor J. Kronberg|Victor Kronberg]]
**[[User:Jeremy R. McLain|Jeremy McLain]]
**[[User:Daniel Winkler|Daniel Winkler]]


*Postdoc Mentors
A major goal in nanotechnology is the find useful forms of DNA computation. This broad definition includes amplifiers, logic gates, oscillators, structural manipulations, and many more forms of controlled responses. We believe an enzyme-free, DNA toehold exchange catalyzed system that preforms the computation of “counting” can be useful in various fields of biotechnology. Counting, by our definition, relies on two main principles. The first is the input that is being counted must be the same with each pulse and the second is the output of the counter must be independent of the input quantity or concentration. That is, regardless of the amount of input used, the counter must only reach completion after the specified number of counts, or pulses.
**Dr. Peter Allen
**[[User:Xi_Chen|Dr. Xi Chen]]


*Faculty mentors
**[http://ellingtonlab.org/ Dr. Andrew Ellington]
</div>
</div>


Line 111: Line 130:
<div style="height: 30px; width: 320px; text-align: left; float: right; margin-left: 5px;">
<div style="height: 30px; width: 320px; text-align: left; float: right; margin-left: 5px;">


<div style="background-color: #51D535; padding: 10px 10px 10px;">
<div style="background-color: #3F70C3; padding: 10px 10px 10px;">
<span style="font-size: 20px; font-family: Verdana; color:#FFFFFF; vertical-align: middle;">Objective</span>
<span style="font-size: 20px; font-family: Verdana; color:#FFFFFF; vertical-align: middle;">The essence of a counter</span>
</div>
 
<div style="padding: 10px; background-color:#000000; margin-top: 5px; height: 345px;">
<center>[[Image:Counteressence.png|300px]]</center>
</div>
 
</div>
</div>


<div style="padding: 10px; background-color:#eeeeee; margin-top: 5px; height: 745px;">
<div style="width: 645px; text-align: left; float: left; margin-left: 5px">
<center>'''The Counting Machine as a Modular Nanoscale DNA Component.'''</center>
 
<div style="padding: 10px; background-color:#000000; margin-top: 5px; height: 600px;">


A major goal in nanotechnology is the find useful forms of DNA computation. This broad definition includes amplifiers, logic gates, oscillators, structural manipulations, and many more forms of controlled responses. We believe an enzyme-free, DNA toehold exchange catalyzed system that preforms the computation of “counting” can be useful in various fields of biotechnology. Counting, by our definition, relies on two main principles. The first is the input that is being counted must be the same with each pulse and the second is the output of the counter must be independent of the input quantity or concentration. That is, regardless of the amount of input used, the counter must only reach completion after the specified number of counts, or pulses.
<html><object style="height: 390px; width: 640px"><param name="movie" value="http://www.youtube.com/v/hFEjbkRfkL0?version=3&feature=player_detailpage"><param name="allowFullScreen" value="true"><param name="allowScriptAccess" value="always"><embed src="http://www.youtube.com/v/hFEjbkRfkL0?version=3&feature=player_detailpage" type="application/x-shockwave-flash" allowfullscreen="true" allowScriptAccess="always" width="640" height="360"></object></html>


</div>
</div>

Latest revision as of 23:37, 2 November 2011

<html><head> <style type="text/css">

  1. outerbox{

//background-image:url( 'http://openwetware.org/images/7/75/Utbiomodbg1.png' ); //background-repeat:repeat-x; background-image: linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%); background-image: -o-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%); background-image: -moz-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%); background-image: -webkit-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%); background-image: -ms-linear-gradient(bottom, rgb(0,0,0) 9%, rgb(204,85,0) 55%);

background-image: -webkit-gradient( linear, left bottom, left top, color-stop(0.09, rgb(0,0,0)), color-stop(0.55, rgb(204,85,0)) ); }

.navbox { position: relative; float: left; }

ul#nav {

   list-style: none;
   display: block;
   width: 200px;
   left: -29px;
   top: -20px;
   position: relative;
   padding: 60px 0 60px 0;
   width: 200px;
   background: url( 'http://openwetware.org/images/6/6f/Shad2.png' ) no-repeat;
   background-size: 50% 100%;

}

li { margin: 5px 0 0 0; }

ul#nav a:hover {

    text-decoration: none;

}

ul#nav li span {

   -webkit-transition: all 0.3s ease-out;
   -moz-transition: all 0.3s ease-out;
   -o-transition: all 0.3s ease-out;
   background: #E07020 url( 'http://openwetware.org/images/4/46/Border.png' ) no-repeat;
   color: #174867;
   padding: 7px 15px 7px 15px;
   border-top-right-radius: 10px;
   border-bottom-right-radius: 10px;
   width: 100px;
   display: block;
   text-decoration: none;
   box-shadow: 2px 2px 4px #BB4400;

}

ul#nav li span:hover {

   background: #F08030 url( 'http://openwetware.org/images/4/46/Border.png' ) no-repeat;
   color: #67a5cd;
   padding: 7px 15px 7px 30px;
   display: block;

}

</style> </head> </html>

Objective

Counting Events with a DNA Processor

A major goal in nanotechnology is the find useful forms of DNA computation. This broad definition includes amplifiers, logic gates, oscillators, structural manipulations, and many more forms of controlled responses. We believe an enzyme-free, DNA toehold exchange catalyzed system that preforms the computation of “counting” can be useful in various fields of biotechnology. Counting, by our definition, relies on two main principles. The first is the input that is being counted must be the same with each pulse and the second is the output of the counter must be independent of the input quantity or concentration. That is, regardless of the amount of input used, the counter must only reach completion after the specified number of counts, or pulses.

The essence of a counter

<html><object style="height: 390px; width: 640px"><param name="movie" value="http://www.youtube.com/v/hFEjbkRfkL0?version=3&feature=player_detailpage"><param name="allowFullScreen" value="true"><param name="allowScriptAccess" value="always"><embed src="http://www.youtube.com/v/hFEjbkRfkL0?version=3&feature=player_detailpage" type="application/x-shockwave-flash" allowfullscreen="true" allowScriptAccess="always" width="640" height="360"></object></html>