Biomod/2011/UTAustin/Hook'em Hybridizers/CircDesigNA

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This article discusses the nucleic acid sequence design program designed for building DNA circuits, CircDesigNA.  
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This article discusses the nucleic acid sequence design program created to build DNA circuits, CircDesigNA.  
===Availability===
===Availability===
CircDesigNA is available for use at [http://cssb.utexas.edu/circdesigna its website].  
CircDesigNA is available for use at [http://cssb.utexas.edu/circdesigna its website].  
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Tutorials are available at [[Biomod/2011/UTAustin/Hook'em Hybridizers/CircDesigNA/Help|this website]]
===What it does===
===What it does===
CircDesigNA employs a genetic algorithm to optimize an objective function which scores a sequence assignment on specificity of interactions. This objective function is described as follows:
CircDesigNA employs a genetic algorithm to optimize an objective function which scores a sequence assignment on specificity of interactions. This objective function is described as follows:
[[Image:CircDesignaFunction.png|540px|CircDesigNA Score Function]]
[[Image:CircDesignaFunction.png|540px|CircDesigNA Score Function]]

Current revision

This article discusses the nucleic acid sequence design program created to build DNA circuits, CircDesigNA.

Availability

CircDesigNA is available for use at its website.

Tutorials are available at this website

What it does

CircDesigNA employs a genetic algorithm to optimize an objective function which scores a sequence assignment on specificity of interactions. This objective function is described as follows: CircDesigNA Score Function

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