Biomod/2012/Tianjin/Attributions
<html> <style> /* Back to top css */ .back-to {
position: fixed; bottom: 35px; *bottom: 50px; _bottom: 35px; right: 10px; z-index: 999; width: 50px; zoom: 1 }
- html .back-to {
/* 不能用 _position 这种写法,因为它在IE7+也会执行expression。。。 */ position: expression(function(ele){ele.runtimeStyle.position='absolute';Expressions.style.position.fixed(ele);}(this)) }
.back-to {
float: right; display: block; width: 50px; height: 50px; background: url(http://a.xnimg.cn/imgpro/button/back-home.png) no-repeat 0 0; outline: 0 none; text-indent: -9999em;
}
.back-to:hover {
background-position: -50px 0 }
.back-to .back-top {
float: right; display: block; width: 50px; height: 50px; background: url(http://a.xnimg.cn/imgpro/button/back-top.png) no-repeat 0 0; margin-left: 10px; outline: 0 none; text-indent: -9999em }
.back-to .backtotop {
float: left; display: block; width: 50px; height: 50px; background: #666 url(http://a.xnimg.cn/imgpro/arrow/btt.png) 8px -57px no-repeat; margin-bottom: 15px; outline: 0 none; text-indent: -9999em; -moz-border-radius: 4px; -khtml-border-radius: 4px; -webkit-border-radius: 4px; border-radius: 4px; position: relative -moz-box-shadow: 0px 0px 15px #ccc; -webkit-box-shadow: 0px 0px 15px #ccc; box-shadow: 0px 0px 15px #ccc; }
.back-to .backtotop:hover {
background-color: #333; background-position: 8px 13px }
.back-to .backtotop .back-tip {
position: absolute; visibility: hidden; top: -31px; left: -10px }
.back-to .backtotop:hover .back-tip {
visibility: visible }
.back-to .back-top:hover {
background-position: -50px 0 }
/* changed default background */
.container{background-color: #ffffff; margin-top:0px}
- column-content {width: 0px; float: left; margin: 0 0 0 0;padding: 0;}
.firstHeading {display:none; width:0px;}
- column-one {display:none; width:0px;background-color: #ffffff;}
- globalWrapper{width: 970px; background-color: #ffffff; margin-left: auto; margin-right: auto;
-moz-box-shadow: 0px 0px 15px #ccc; -webkit-box-shadow: 0px 0px 15px #ccc; box-shadow: 0px 0px 15px #ccc;}
- content{ margin: 0 0 0 0; align: center; padding: 12px 12px 12px 12px; width: 940px;background-color: #ffffff; border: 0;}
- bodyContent{ width: 940px; align: center; background-color: #ffffff;}
- column-content{width: 970px;background-color: #ffffff;}
body { background: url(http://openwetware.org/images/1/13/TJU2012-Bg.gif) repeat-x #F9F9F7; }
/* basic link rules */
a:link {
color: #4F6DDC;
}
a:visited {
color: #4F6DDC;
}
a:hover {
color: #4F6DDC;
text-decoration: none;
}
/* -- navigator css -- */
- navDiv ul { margin: 0; padding: 0;}
- navDiv li { margin: 0; padding: 0;}
- navDiv a { margin: 0; padding: 0;}
- navDiv ul {list-style: none; z-index:999;}
- navDiv a {text-decoration: none;}
- navDiv
{ position: relative; height: 40px; width:970px; left: -12px; top: 0px; background-color: #111; background-repeat: repeat-x; box-shadow: 0px 5px 8px rgba(0,0,0,0.4); margin-bottom:20px; }
- navDiv > ul > li {
float: left; margin-left: 38px; position: relative;
}
- navDiv > ul > li > a {
color: #aaa; font-family: Verdana, 'Lucida Grande'; font-size: 15px; line-height: 40px; padding: 11px 20px;
-webkit-transition: color .15s;
-moz-transition: color .15s; -o-transition: color .15s; transition: color .15s;
}
- navDiv > ul > li > a:hover {color: #333333; background-color: #FFFFFF;}
- navDiv > ul > li > ul
{
opacity: 0; visibility: hidden; padding: 16px 0 20px 0; background-color: rgb(250,250,250); text-align: left; position: absolute; top: 30px; left: 50%; margin-left: -90px; width: 180px;
-webkit-transition: all .3s .1s;
-moz-transition: all .3s .1s; -o-transition: all .3s .1s; transition: all .3s .1s;
-webkit-border-radius: 5px;
-moz-border-radius: 5px; border-radius: 5px;
-webkit-box-shadow: 0px 1px 3px rgba(0,0,0,.4);
-moz-box-shadow: 0px 1px 3px rgba(0,0,0,.4); box-shadow: 0px 1px 3px rgba(0,0,0,.4);
}
- navDiv > ul > li:hover > ul
{
opacity: 1; top: 40px; visibility: visible;
}
- navDiv > ul > li > ul:before
{
content: ''; display: block; border-color: transparent transparent rgb(250,250,250) transparent; border-style: solid; border-width: 10px; position: absolute; top: -20px; left: 50%; margin-left: -10px;
}
- navDiv > ul ul > li { position: relative;}
- navDiv ul ul a
{
color: rgb(50,50,50); font-family: Verdana, 'Lucida Grande'; font-size: 13px; background-color: rgb(250,250,250); padding: 5px 8px 7px 16px; display: block;
-webkit-transition: background-color .1s;
-moz-transition: background-color .1s; -o-transition: background-color .1s; transition: background-color .1s;
}
- navDiv ul ul a:hover {background-color: rgb(240,240,240);}
- navDiv ul ul ul
{
visibility: hidden; opacity: 0; position: absolute; top: -16px; left: 206px; padding: 16px 0 20px 0; background-color: rgb(250,250,250); text-align: left; width: 160px;
-webkit-transition: all .3s;
-moz-transition: all .3s; -o-transition: all .3s; transition: all .3s;
-webkit-border-radius: 5px;
-moz-border-radius: 5px; border-radius: 5px;
-webkit-box-shadow: 0px 1px 3px rgba(0,0,0,.4);
-moz-box-shadow: 0px 1px 3px rgba(0,0,0,.4); box-shadow: 0px 1px 3px rgba(0,0,0,.4);
}
- navDiv ul ul > li:hover > ul { opacity: 1; left: 196px; visibility: visible;}
- navDiv ul ul a:hover
{
background-color: #777777; color: rgb(240,240,240);
}
/* Abstract in pages css */
- tianjin-right-content {
float: right; width: 280px; margin-left: 20px; font-family:"Calibri"; font-size:120%; }
- tianjin-right-content ul {
margin: 0; padding: 0 1em; }
- tianjin-right-content ul li {
list-style: none; margin: 0 0 1em 0; } .tianjin-description { font-size: small; color: #8A8A8A; }
/* Text content css*/
- text-content {
width:620px; font-family:"Calibri"; font-size:120%; padding: 10px 10px 10px 10px; }
/* footer in the middle */
- footer{position: center; width: 970px;}
</style>
<!--header starts here-->
<div id="header"> <div class="title" style="height: 180px;"> <a href="http://openwetware.org/wiki/Biomod/2012/Tianjin"><img src ="http://openwetware.org/images/7/79/TJU2012-Header.png"></a> <div style="float:right;"><img src="http://openwetware.org/images/c/cd/TJU2012-logo.png"></div> <div class="topsearch" style="position:absolute;top:175px;right:90px;"> <form method="GET" action="http://www.google.com/search"> <input type="hidden" name="hl" value="en"> <input type="hidden" name="sitesearch" value="openwetware.org"> <input type="hidden" name="domains" value="openwetware.org"> <input type="hidden" name="as_epq" value="Tianjin"> <input type="text" name="q" class="frm"><input type="submit" class="btn" value="Search"> </form> </div> </div> </div>
<!--navigator starts here-->
<div id="navDiv">
<ul>
<li class='active '><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin'><span>Home</span></a></li> <li class='active '><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Team'><span>Team</span></a> </li> <li class='has-sub'><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Project/Background'><span>Designs</span></a> <ul> <li><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Project/Background'><span>Background</span></a></li> <li><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Project/LogicGate'><span>The Logic Gate</span></a></li> <li><a href="http://openwetware.org/wiki/Biomod/2012/Tianjin/Project/YDNA"><span>Y-DNA</span></a></li> <li><a href="http://openwetware.org/wiki/Biomod/2012/Tianjin/Project/Origami"><span>The Origami Amplifier</span></a></li> </ul>
</li>
<li class='has-sub'><a href='#'><span>Experiments and Results</span></a>
<ul> <li><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Result/LogicGate'><span>The Logic Gate</span></a></li> <li><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Result/YDNA'><span>Y-DNA</span></a></li> <li><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Result/Origami'><span>The Origami Amplifier</span></a></li>
</ul>
</li> <li class='active'><a href="http://openwetware.org/wiki/Biomod/2012/Tianjin/Protocol"><span>Protocol</span></a>
</li>
<li class='active'><a href='http://openwetware.org/wiki/Biomod/2012/Tianjin/Attributions'><span>Attributions</span></a></li>
</ul> </div>
<div id="toolBackTo" class="back-to" style="left: 1175px; "> <a stats="site_footer_back_to_top" class="backtotop" href="#top" onclick="if(Sizzle('#sidebar2 .ready-to-fix')[0]) Sizzle('#sidebar2 .ready-to-fix')[0].style.position = 'static';window.scrollTo(0,0);if(Sizzle('#sidebar2 .ready-to-fix')[0]) Sizzle('#sidebar2 .ready-to-fix')[0].style.position = '';return false;">Back to top <img stats="site_footer_back_to_top" src="http://openwetware.org/images/a/a7/TJU2012-Back-tip.png" class="back-tip"> </a> </div>
</html>
<html>
<style>
- toc {
width:260px; margin-right:10px; } .tocbefore { position:absolute; right:0px; }
.tocafter { position:fixed; top:30px; right:195px; }
</style>
<script type="text/javascript"> function getScrollTop() {
var scrollPos; if (window.pageYOffset) { scrollPos = window.pageYOffset; } else if (document.compatMode) { if(document.compatMode != 'BackCompat') { scrollPos = document.documentElement.scrollTop; } else if (document.body) { scrollPos = document.body.scrollTop; } } if(scrollPos < 300){
document.getElementById("toc").className="tocbefore"; } else{ document.getElementById("toc").className="tocafter"; } } window.onscroll=getScrollTop; </script>
<!-- text starts here --> <div id="text-content"> </html>
References
Main References
DNA logic gate
- Liu J, Lu Y, A DNAzyme Catalytic Beacon Sensor for Paramagnetic Cu2+ Ions in Aqueous Solution with High Sensitivity and Selectivity[J], J. Am. Chem. Soc., 2007(129): 9838-9839.
- Wang H, Kim Y, Liu H, Zhu Z, Bamrungsap S, Tan W, Engineering a Unimolecular DNA-Catalytic Probe for Single Lead Ion Monitoring[J], J. Am. Chem. Soc., 2009(131): 8221–8226.
- Stojanovic M N, Stefanovic D, A deoxyribozyme-based molecular automaton[J], Nature Biotechnology, 2003(21): 1069-1074.
Y-DNA
- Um S H, Lee J B, Park N, Kwon S Y, Umbach C C, Luo D, Enzyme-catalysed assembly of DNA hydrogel[J], Nature Materials, 2006(5): 797-801.
The Origami Amplifier
- Harvard BIOMOD 2011 wiki
Strongly Recommended Reading
DNA logic gate
- Penchovsky R, Braker R R, Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes[J], Nature Biotechnology, 2005(23): 1424-1433.
- Stojanovic M N, Stefanovic´ D, Deoxyribozyme-Based Half-Adder[J], J. Am. Chem. Soc., 2003(125): 6673-6676.
- Macdonald J, Li Y, Sutovic M, Lederman H, Pendri K, Lu W, Andrews B L, Stefanovic D, Stojanovic M N, Medium Scale Integration of Molecular[J], Nano Letters, 2006(6): 2598-2603.
Y-DNA
- Park N, Um S H, Funabashi H, Xu J, Luo D, A cell-free protein-producing gel[J], Nature Materials, 2009(8): 432-437
- Li Y, Tseng Y D, Kwon S Y, Espaux L D, Bunch J S, Mceuen P L, Luo D, Controlled assembly of dendrimer-like DNA, Nature Materials, 2004(3): 38-42.
<html>
<html>