Biomod/2012/Titech/Nano-Jugglers/Methods/DNA hybridization: Difference between revisions

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=The result of DNA hybridization in solution of hydrogen peroxide=
=The result of DNA hybridization in solution of hydrogen peroxide=
:'''>>Result page is [[Biomod/2012/Titech/Nano-Jugglers/Results/DNA_hybridization|here]]'''


:Image 1 and 2 shows the observation results of DNA hybridization in solution of Hydrogen peroxide for 90minutes.
:Image 1 and 2 shows the observation results of DNA hybridization in solution of Hydrogen peroxide for 90minutes.
Line 17: Line 15:
:So, we could determine that there is no effect of hydrogen peroxide for dsDNA as well as well as ssDNA.
:So, we could determine that there is no effect of hydrogen peroxide for dsDNA as well as well as ssDNA.


R: SAWADAY ND14 (25mer) DNA
[[Image:The Result of DNA hybridization in solution of hydrogen peroxide.png]]
CAAAAGAGTTAGGATGGGAGCTGGA
 
D: SAWADAY D14(25mer) DNA
TCCAGGTCCCATCCTAACTCTTTTG
Hydrogen peroxide concentration(w/v)
 
①D+R, 0% Hydrogen peroxide
②D+R, 1% Hydrogen peroxide
③D+R, 5% Hydrogen peroxide
④D, 0% Hydrogen peroxide
⑤D, 5% Hydrogen peroxide
⑥R, 0% Hydrogen peroxide
⑦R, 5% Hydrogen peroxide
⑧D+R, 0% Hydrogen peroxide

Revision as of 08:00, 2 September 2012


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The result of DNA hybridization in solution of hydrogen peroxide

Image 1 and 2 shows the observation results of DNA hybridization in solution of Hydrogen peroxide for 90minutes.
From the pictures, the hybridized DNA band appear in lane 1,2,3&8. In lane 4,5,6&7 appears single strand band.
Lane1&8 are the same, lane 2 & 3 are added hydrogen peroxide solution (1% and 5% for 1h)for 90 minutes. In Lane 5&7 shows the observation results of single strand DNA (ssDNA) in solution of Hydrogen peroxide. In lane 4&6 are the control band of ssDNA.


White bar in Image2 represents the same position of Lane 1&8 in that they are the same sample.
Comparing between 4.5.6&7, these 4 lines appear lower than the white line, and 4-5and 6-7 are few differences. If hydrogen peroxide affects ssDNA, destroy, tear up or denature, line 5and 7 will appear in the lower position or becomes unclear. Judging from appearances, differences between positive and negative control ware few.
Comparing 1.2.3 and 8,these lines are completely appear in the white bar.
Differences between these lines are only concentration of hydrogen peroxide. So, we conclude that there is no influence of hydrogen peroxide for DNA hybridizations however DNA is exposed to hydrogen peroxide within 90minutes.
So, we could determine that there is no effect of hydrogen peroxide for dsDNA as well as well as ssDNA.