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== Please fill out references ==
== Please fill out references ==
#Barish, R. D., Rothemund, P. W. K., & Winfree, E. (2005). Two computational primitives for algorithmic self-assembly: copying and counting. Nano letters, 5(12), 2586–92. doi:10.1021/nl052038l
# Barish, R. D., Rothemund, P. W. K., & Winfree, E. (2005). Two computational primitives for algorithmic self-assembly: copying and counting. Nano letters, 5(12), 2586–92. doi:10.1021/nl052038l
#Brun, Y. (2008). Solving NP-complete problems in the tile assembly model. Theoretical Computer Science, 395(1), 31–46. doi:10.1016/j.tcs.2007.07.052
# Bath, J., Green, S. J., Allen, K. E., & Turberfield, A. J. (2009). Mechanism for a directional, processive, and reversible DNA motor. Small (Weinheim an der Bergstrasse, Germany), 5(13), 1513–6. doi:10.1002/smll.200900078
#Chen, X., & Ellington, A. D. (2010). Shaping up nucleic acid computation. Current opinion in biotechnology, 21(4), 392–400. doi:10.1016/j.copbio.2010.05.003
# Bath, J., Green, S. J., & Turberfield, A. J. (2005). A Free-Running DNA Motor Powered by a Nicking Enzyme. Angewandte Chemie, 117(28), 4432–4435. doi:10.1002/ange.200501262
#Dietz, H., Douglas, S. M., & Shih, W. M. (2009). Folding DNA into Twisted and Curved Nanoscale Shapes. Science, 325(5941), 725.
# Birac, J. J., Sherman, W. B., Kopatsch, J., Constantinou, P. E., & Seeman, N. C. (2006). Architecture with GIDEON, a program for design in structural DNA nanotechnology. Journal of molecular graphics & modelling, 25(4), 470–80. doi:10.1016/j.jmgm.2006.03.005
#Ding, B., Deng, Z., Yan, H., Cabrini, S., Zuckermann, R. N., & Bokor, J. (2010). Gold nanoparticle self-similar chain structure organized by DNA origami. Journal of the American Chemical Society, 132(10), 3248–9. doi:10.1021/ja9101198
# Block, S., Blair, D., & Berg, H. (1989). Compliance of bacterial flagella measured with optical tweezers. Nature, 338, 514.
#Douglas, S. M., Bachelet, I., & Church, G. M. (2012a). A logic-gated nanorobot for targeted transport of molecular payloads. Science (New York, N.Y.), 335(6070), 831–4. doi:10.1126/science.1214081
# Brun, Y. (2008). Solving NP-complete problems in the tile assembly model. Theoretical Computer Science, 395(1), 31–46. doi:10.1016/j.tcs.2007.07.052
#Glotzer, S. C. (2004). Self-Assembly of Patchy Particles. Nano Letters, 4(8), 1407–1413. doi:10.1021/nl0493500
# Carter, A., Garbarino, J. E., Wilson-Kubalek, E. M., Shipley, W. E., Cho, C., Milligan, R. A., Vale, R. D., et al. (2008). Structure and Functional Role of Dynein’s Microtubule-Binding Domain. Science, 322(December), 1691–1695.
#He, Y., & Liu, D. R. (2010). Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nature nanotechnology, 5(11), 778–82. doi:10.1038/nnano.2010.190
# Carter, N. J., & Cross, R. a. (2005). Mechanics of the kinesin step. Nature, 435(7040), 308–12. doi:10.1038/nature03528
#Li, B., Ellington, A. D., & Chen, X. (2011). Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic acids research, 39(16), e110. doi:10.1093/nar/gkr504
# Chen, X., & Ellington, A. D. (2010). Shaping up nucleic acid computation. Current opinion in biotechnology, 21(4), 392–400. doi:10.1016/j.copbio.2010.05.003
#Liu, C., Jonoska, N., & Seeman, N. C. (2009). Reciprocal DNA nanomechanical devices controlled by the same set strands. Nano Lett, 9(7), 2641–47. doi: 10.1021/nl901008k
# Chhabra, R., Sharma, J., Liu, Y., & Yan, H. (2006). Addressable molecular tweezers for DNA-templated coupling reactions. Nano letters, 6(5), 978–83. doi:10.1021/nl060212f
#Liu, H., Chen, Y., He, Y., Ribbe, A. E., & Mao, C. (2006a). Approaching The Limit: Can One DNA Oligonucleotide Assemble into Large Nanostructures? Angewandte Chemie, 118(12), 1976–1979. doi:10.1002/ange.200504022
# Choi, H. M. T., Chang, J. Y., Trinh, L. a, Padilla, J. E., Fraser, S. E., & Pierce, N. a. (2010). Programmable in situ amplification for multiplexed imaging of mRNA expression. Nature biotechnology, 28(11), 1208–12. doi:10.1038/nbt.1692
#Liu, H., Chen, Y., He, Y., Ribbe, A. E., & Mao, C. (2006b). Approaching the limit: can one DNA oligonucleotide assemble into large nanostructures? Angewandte Chemie (International ed. in English), 45(12), 1942–5. doi:10.1002/anie.200504022
# Dietz, H., Douglas, S. M., & Shih, W. M. (2009). Folding DNA into twisted and curved nanoscale shapes. Science (New York, N.Y.), 325(5941), 725–30. doi:10.1126/science.1174251
#Lu, Y., & Liu, J. (2006). Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers. Current opinion in biotechnology, 17(6), 580–8. doi:10.1016/j.copbio.2006.10.004
# Dimroth, P., Wang, H., Grabe, M., & Oster, G. (1999). Energy transduction in the sodium F-ATPase of Propionigenium modestum. Proceedings of the National Academy of Sciences of the United States of America, 96(9), 4924–9. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=21793&tool=pmcentrez&rendertype=abstract
#Lund, K., Manzo, A. J., Dabby, N., Michelotti, N., Johnson-Buck, A., Nangreave, J., Taylor, S., et al. (2010). Molecular robots guided by prescriptive landscapes. Nature, 465(7295), 206–10. doi:10.1038/nature09012
# Ding, B., Deng, Z., Yan, H., Cabrini, S., Zuckermann, R. N., & Bokor, J. (2010). Gold nanoparticle self-similar chain structure organized by DNA origami. Journal of the American Chemical Society, 132(10), 3248–9. doi:10.1021/ja9101198
#Macfarlane, R. J., Lee, B., Jones, M. R., Harris, N., Schatz, G. C., & Mirkin, C. a. (2011a). Nanoparticle superlattice engineering with DNA. Science (New York, N.Y.), 334(6053), 204–8. doi:10.1126/science.1210493
# Dirks, R. M., & Pierce, N. a. (2004). Triggered amplification by hybridization chain reaction. Proceedings of the National Academy of Sciences of the United States of America, 101(43), 15275–8. doi:10.1073/pnas.0407024101
#Mao, C., Sun, W., Shen, Z., & Seeman, N. C. (1999). A nanomechanical device based on the B-Z transition of DNA. Nature, 397(6715), 144–6. doi:10.1038/16437
# Douglas, S. M., Bachelet, I., & Church, G. M. (2012). A logic-gated nanorobot for targeted transport of molecular payloads. Science (New York, N.Y.), 335(6070), 831–4. doi:10.1126/science.1214081
#McNaughton, B. R., Cronican, J. J., Thompson, D. B., & Liu, D. R. (2009). Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins. Proceedings of the National Academy of Sciences of the United States of America, 106(15), 6111–6. doi:10.1073/pnas.0807883106
# Douglas, S. M., Dietz, H., Liedl, T., Högberg, B., Graf, F., & Shih, W. M. (2009). Self-assembly of DNA into nanoscale three-dimensional shapes. Nature, 459(7245), 414–8. doi:10.1038/nature08016
#Mirkin, C. A. (2000). from Recipient of ACS Award in Pure, 2258–2272
# Fahrner, K., Ryu, W. S., & Berg, H. C. (2003). Bacterial flagellar switching under load. Nature, 423(June), 938.
#Omabegho, T., Sha, R., & Seeman, N. C. (2009). A bipedal DNA Brownian motor with coordinated legs. Science (New York, N.Y.), 324(5923), 67–71. doi:10.1126/science.1170336
# Gennerich, A., Carter, A. P., Reck-Peterson, S. L., & Vale, R. D. (2007). Force-induced bidirectional stepping of cytoplasmic dynein. Cell, 131(5), 952–65. doi:10.1016/j.cell.2007.10.016
#Peng, X., Chen, H., Draney, D. R., Volcheck, W., Schutz-Geschwender, A., & Olive, D. M. (2009). A nonfluorescent, broad-range quencher dye for Förster resonance energy transfer assays. Analytical biochemistry, 388(2), 220–8. doi:10.1016/j.ab.2009.02.024
# Glotzer, S. C. (2004). Self-Assembly of Patchy Particles. Nano Letters, 4(8), 1407–1413. doi:10.1021/nl0493500
#Wendt, T. G., Volkmann, N., Skiniotis, G., Goldie, K. N., Müller, J., Mandelkow, E., & Hoenger, A. (2002). Microscopic evidence for a minus-end-directed power stroke in the kinesin motor ncd. The EMBO journal, 21(22), 5969–78. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=137211&tool=pmcentrez&rendertype=abstract
# Green, S., Bath, J., & Turberfield, a. (2008). Coordinated Chemomechanical Cycles: A Mechanism for Autonomous Molecular Motion. Physical Review Letters, 101(23), 20–23. doi:10.1103/PhysRevLett.101.238101
#Woo, S., & Rothemund, P. W. K. (2011). Programmable molecular recognition based on the geometry of DNA nanostructures. Nature chemistry, 3(8), 620–7. doi:10.1038/nchem.1070
# Grierer, A. (1966). Model for DNA and Protein Interaction and the Function of the Operator. Nature, 212(December), 1480.
#Yin, P., Choi, H. M. T., Calvert, C. R., & Pierce, N. a. (2008). Programming biomolecular self-assembly pathways. Nature, 451(7176), 318–22. doi:10.1038/nature06451
# Gu, H., Chao, J., Xiao, S.-J., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. Nature, 465(7295), 202–5. doi:10.1038/nature09026
#Yurke, B., Turber, A. J., Jr, A. P. M., Simmel, F. C., & Neumann, J. L. (2000). A DNA-fuelled molecular machine made of DNA, 406(August), 605–608
# He, Y., & Liu, D. R. (2010). Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nature nanotechnology, 5(11), 778–82. doi:10.1038/nnano.2010.190
#Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. Journal of the American Chemical Society, 131(47), 17303–14. doi:10.1021/ja906987s
# Itoh, H., Takahashi, A., Adachi, K., Noji, H., Yasuda, R., Yoshida, M., & Kinosita, K. J. (2004). Mechanically driven ATP synthesis by F 1 -ATPase. Nature, 427(January), 465–468. doi:10.1038/nature02229.1.
# Kallenbach, N. R., Ma, R.-I., & Seeman, N. C. (1983). An immobile nucleic acid junction constructed from oligonucleotides. Nature, 305(27), 829.
# Kallenbach, N. R., Petrillol, M. L., & Laboratories, L. (1986). Three-arm nucleic acid junctions are flexible. Nucleic acids research, 14(24), 9745–9753.
# Kinbara, K., & Aida, T. (2005). Toward intelligent molecular machines: directed motions of biological and artificial molecules and assemblies. Chemical reviews, 105(4), 1377–400. doi:10.1021/cr030071r
# Li, B., Ellington, A. D., & Chen, X. (2011). Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic acids research, 39(16), e110. doi:10.1093/nar/gkr504
# Liu, C., Jonoska, N., & Seeman, N. C. (2009). Reciprocal DNA nanomechanical devices controlled by the same set strands. Nano letters, 9(7), 2641–7. doi:10.1021/nl901008k
# Liu, H., Chen, Y., He, Y., Ribbe, A. E., & Mao, C. (2006). Approaching The Limit: Can One DNA Oligonucleotide Assemble into Large Nanostructures? Angewandte Chemie, 118(12), 1976–1979. doi:10.1002/ange.200504022
# Lu, Y., & Liu, J. (2006). Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers. Current opinion in biotechnology, 17(6), 580–8. doi:10.1016/j.copbio.2006.10.004
# Lund, K., Manzo, A. J., Dabby, N., Michelotti, N., Johnson-Buck, A., Nangreave, J., Taylor, S., et al. (2010). Molecular robots guided by prescriptive landscapes. Nature, 465(7295), 206–10. doi:10.1038/nature09012
# Macfarlane, R. J., Lee, B., Jones, M. R., Harris, N., Schatz, G. C., & Mirkin, C. a. (2011). Nanoparticle superlattice engineering with DNA. Science (New York, N.Y.), 334(6053), 204–8. doi:10.1126/science.1210493
# Mao, C., Sun, W., Shen, Z., & Seeman, N. C. (1999). A nanomechanical device based on the B-Z transition of DNA. Nature, 397(6715), 144–6. doi:10.1038/16437
# McNaughton, B. R., Cronican, J. J., Thompson, D. B., & Liu, D. R. (2009). Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins. Proceedings of the National Academy of Sciences of the United States of America, 106(15), 6111–6. doi:10.1073/pnas.0807883106
# Mehta, a D., Rock, R. S., Rief, M., Spudich, J. a, Mooseker, M. S., & Cheney, R. E. (1999). Myosin-V is a processive actin-based motor. Nature, 400(6744), 590–3. doi:10.1038/23072
# Mermall, V., Post, P. L., & Mooseker, M. S. (1998). Unconventional Myosins in Cell Movement, Memrane Traffic, and Signal Transduction. Science, 279(January), 527.
# Mirkin, C. A. (2000). Programming the Assembly of Two- and Three-Dimensional Architectures with DNA and Nanoscale Inorganic Building Blocks. Inorg. Chem., 39, 2258–2272.
# Noji, H., Yasuda, R., Yoshida, M., & Kinosita, K. J. (1997). Direct observation of the rotation of F1-ATPase. Nature, 386, 299.
# Omabegho, T., Sha, R., & Seeman, N. C. (2009). A bipedal DNA Brownian motor with coordinated legs. Science (New York, N.Y.), 324(5923), 67–71. doi:10.1126/science.1170336
# Pei, R., Taylor, S. K., Stefanovic, D., Rudchenko, S., Mitchell, T. E., & Stojanovic, M. N. (2006). Behavior of Polycatalytic Assemblies in a Substrate-Displaying Matrix Nanoassembly Incorporating Catalytic Kinesis because they couple diffusion ( movement ) to a catalytic process . For example ,. Journal of the American Chemical Society, 128, 12693–12699.
# Peng, X., Chen, H., Draney, D. R., Volcheck, W., Schutz-Geschwender, A., & Olive, D. M. (2009). A nonfluorescent, broad-range quencher dye for Förster resonance energy transfer assays. Analytical biochemistry, 388(2), 220–8. doi:10.1016/j.ab.2009.02.024
# Rothemund, P. W. K. (2006). Folding DNA to create nanoscale shapes and patterns. Nature, 440(7082), 297–302. doi:10.1038/nature04586
# Seeman, N. C. (1991). The use of branched DNA for nanoscale fabrication. Nanotechnology, 149.
# Seeman, N. C. (1999). DNA engineering and its application to nanotechnology. Trends in Biotechnology, 7799(99), 437–443.
# Seeman, N. C., & Kallenbach, N. R. (1983). Design of immobile nucleic acid junctions. Biophysics, 44(November), 201–209.
# Sherman, W. B., & Seeman, N. C. (2004). A Precisely Controlled DNA Biped Walking Device. Nano Letters, 4(7), 1203–1207. doi:10.1021/nl049527q
# Shin, J.-S., & Pierce, N. a. (2004). A synthetic DNA walker for molecular transport. Journal of the American Chemical Society, 126(35), 10834–5. doi:10.1021/ja047543j
# Sowa, Y., Rowe, A. D., Leake, M. C., Yakushi, T., Homma, M., Ishijima, A., & Berry, R. M. (2005). Direct observation of steps in rotation of the bacterial flagellar motor. Nature, 437(7060), 916–9. doi:10.1038/nature04003
# Tian, Y., He, Y., Chen, Y., Yin, P., & Mao, C. (2005). A DNAzyme that walks processively and autonomously along a one-dimensional track. Angewandte Chemie (International ed. in English), 44(28), 4355–8. doi:10.1002/anie.200500703
# Vale, R. D. (2003). The molecular motor toolbox for intracellular transport. Cell, 112(4), 467–80. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/12600311
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# Watson, J. D., & Crick, F. H. C. (1953). A Structure for Deoxyribose Nucleic Acid. Nature, 171(April), 738.
# Wei, B., Dai, M., & Yin, P. (2012). Complex shapes self-assembled from single-stranded DNA tiles. Nature, 485(7400), 623–6. doi:10.1038/nature11075
# Wendt, T. G., Volkmann, N., Skiniotis, G., Goldie, K. N., Müller, J., Mandelkow, E., & Hoenger, A. (2002). Microscopic evidence for a minus-end-directed power stroke in the kinesin motor ncd. The EMBO journal, 21(22), 5969–78. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=137211&tool=pmcentrez&rendertype=abstract
# Woo, S., & Rothemund, P. W. K. (2011). Programmable molecular recognition based on the geometry of DNA nanostructures. Nature chemistry, 3(8), 620–7. doi:10.1038/nchem.1070
# Yildiz, A., Tomishige, M., Vale, R. D., & Selvin, P. R. (2004). Kinesin walks hand-over-hand. Science (New York, N.Y.), 303(5658), 676–8. doi:10.1126/science.1093753
# Yin, P., Choi, H. M. T., Calvert, C. R., & Pierce, N. a. (2008). Programming biomolecular self-assembly pathways. Nature, 451(7176), 318–22. doi:10.1038/nature06451
# Yurke, B., Turber, A. J., Jr, A. P. M., Simmel, F. C., & Neumann, J. L. (2000). A DNA-fuelled molecular machine made of DNA. Nature, 406(August), 605–608.
# Zhang, D. Y., Turberfield, A. J., Yurke, B., & Winfree, E. (2007). Engineering entropy-driven reactions and networks catalyzed by DNA. Science (New York, N.Y.), 318(5853), 1121–5. doi:10.1126/science.1148532
# Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. Journal of the American Chemical Society, 131(47), 17303–14. doi:10.1021/ja906987s
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Please fill out references

  1. Barish, R. D., Rothemund, P. W. K., & Winfree, E. (2005). Two computational primitives for algorithmic self-assembly: copying and counting. Nano letters, 5(12), 2586–92. doi:10.1021/nl052038l
  2. Bath, J., Green, S. J., Allen, K. E., & Turberfield, A. J. (2009). Mechanism for a directional, processive, and reversible DNA motor. Small (Weinheim an der Bergstrasse, Germany), 5(13), 1513–6. doi:10.1002/smll.200900078
  3. Bath, J., Green, S. J., & Turberfield, A. J. (2005). A Free-Running DNA Motor Powered by a Nicking Enzyme. Angewandte Chemie, 117(28), 4432–4435. doi:10.1002/ange.200501262
  4. Birac, J. J., Sherman, W. B., Kopatsch, J., Constantinou, P. E., & Seeman, N. C. (2006). Architecture with GIDEON, a program for design in structural DNA nanotechnology. Journal of molecular graphics & modelling, 25(4), 470–80. doi:10.1016/j.jmgm.2006.03.005
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  6. Brun, Y. (2008). Solving NP-complete problems in the tile assembly model. Theoretical Computer Science, 395(1), 31–46. doi:10.1016/j.tcs.2007.07.052
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