Biomod/2012/UTokyo/UT-Komaba/Experiment/Trioscillate System: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
Line 6: Line 6:


Trioscillate system is quite similar to bistable system but it has three stable states, A, B and C.
Trioscillate system is quite similar to bistable system but it has three stable states, A, B and C.
The diagram above shows the clockwise cycle of inhibition, the cycle of the states is A->B->C->A->B and it theoretically continues forever.
The diagram above shows the clockwise cycle of inhibition, the cycle of the states is A -> B -> C -> A -> B and it theoretically continues forever.
However, we can design the system with the anticlockwise cycle of inhibition so that the state changes like A->C->B->A->C and it theoretically continues forever.
However, we can design the system with the anticlockwise cycle of inhibition so that the state changes like A -> C -> B -> A -> C and it theoretically continues forever.
Also, Trioscillate system does not need input, and it changse its state by itself.
Also, Trioscillate system does not need input, and it changse its state by itself.
Therefore, when it is introduced to the DNA modified origami, we can make DNA tablet which change its surface by titself and show three pictures.
Therefore, when it is introduced to the DNA modified origami, we can make the DNA tablet which change its surface by titself and show three pictures.
The purpose of the experiment is to find the best condition of trioscillate system so that the tablet can show pictures properly by itself when it is introduced to DNA tablet.
The purpose of the experiment is to find the best condition of trioscillate system so that the tablet can show pictures properly by itself when it is introduced to the DNA tablet.


==Experiment==
==Experiment==

Revision as of 22:31, 20 October 2012

<html>

<style type="text/css"> <!--

  1. column-one {display:none; width:0px;}
  2. column-content {margin: 0;}

.container{background-color: #ffffff; margin-top:0px} .OWWNBcpCurrentDateFilled {display: none;}

  1. globalWrapper{margin: 0 auto; padding: 0; width: 900px;}


.firstHeading {display:none; width:0px;}

  1. content {margin-left: 0; padding: 0; border: none;}
  2. sidebar-main {display:none; width:0px;}
  3. footer{position: center; margin: 0;}


body {

 margin: 0;
font-family: Calibri, Verdana, helvetica, sans-serif;
 background: url(http://openwetware.org/images/2/21/Biomod-2012-ut-komaba-Metal-texture.jpg) darkgray repeat-y;

}

  1. content {
  margin: 0;

}

/*title*/

  1. title{
 margin: 10px 0;
 padding: auto;
 background-color: black;
 text-align :center;

}

  1. navi ul {
 font-size: 12px;
 margin: 0 0 30px;
 padding: 0;
 text-align:center;
 height: 30px;
 background-color: black}
  1. navi ul li {
 list-style-type: none;
 float: left;
 padding: 0;
 margin: 0;
 display: block}
  1. navi ul li a {
 display: block;
 width: 100px;
 line-height: 30px;
 text-decoration: none;
 text-align: center;
 color: #ffffff;
 background-color: black;

}

  1. navi ul li a:hover {
 background-color: gainsboro;
 color: black;

}


  1. bodyContent{
 width: 800px;
 margin: auto;
 padding: 50px;
 background: url("http://openwetware.org/images/c/c2/Biomod_2012_UToyko_UT-Komaba_background.png") white repeat-y;
 font-size: 140%;

}

  1. toc{
 font-size: 80%;

}

/* table */ table {

 border: solid 1px black;
 border-collapse: collapse;
 border-spacing: 0;

}

table.noborder, table.noborder th, table.noborder td{

 border: none;

}

table th{

 border: solid 1px black;
 padding: 1px 5px;
 color: white;
 background-color: darkgray;
 text-align: center;

}

table td{

 border: solid 1px black;
 padding: 1px 5px;
 text-align: center;

}

table.tdleft td{

 text-align: left;

}


h1,h2,h3,h4 {

 font-family: serif;
 clear: both;

}

table.dialog{

 border: none;

}

table.dialog th{

 border: none;
 padding-top: 0px;
 background-color: white;
 color: black;
 text-decolation: bold;
 text-align: left;

}

table.dialog td{

 border: none;
 padding: 5px 0;
 text-align: left;

}

--> </style>

<div id="title"><img src="http://openwetware.org/images/4/47/Biomod_2012_UTokyo_UT-Komaba_Top.png" alt="DNA tablet" width="800" height="120" onClick="this.src='http://openwetware.org/images/7/7d/BIOMOD_2012_UTokyo_UT-Komaba_title-animation.gif'"/></div>

<div id="navi"> <ul>

 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba">Home</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Idea">Idea</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Simulation">Simulation</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Experiment">Experiment</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Progress">Progress</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Episode">Episode</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Team">Team</a></li>
 <li><a href="/wiki/Biomod/2012/UTokyo/UT-Komaba/Supplementary">Supplementary</a></li>

</ul> </div>

</html>

Concept

Trioscillate System Concept
Trioscillate System Concept

Trioscillate system is quite similar to bistable system but it has three stable states, A, B and C. The diagram above shows the clockwise cycle of inhibition, the cycle of the states is A -> B -> C -> A -> B and it theoretically continues forever. However, we can design the system with the anticlockwise cycle of inhibition so that the state changes like A -> C -> B -> A -> C and it theoretically continues forever. Also, Trioscillate system does not need input, and it changse its state by itself. Therefore, when it is introduced to the DNA modified origami, we can make the DNA tablet which change its surface by titself and show three pictures. The purpose of the experiment is to find the best condition of trioscillate system so that the tablet can show pictures properly by itself when it is introduced to the DNA tablet.

Experiment