CANB 610:Materials

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Week 11: TBA)
Current revision (18:31, 4 April 2012) (view source)
(Lecture Slides)
 
(9 intermediate revisions not shown.)
Line 76: Line 76:
#Science_Photo_Library nice pictures for presentations http://www.sciencephoto.com/search?subtype=keywords&searchstring=transcription&oldsearchstring=ribosome&matchtype=&sort_results=&media_type=images&license=all&channel=all&Search.x=0&Search.y=0
#Science_Photo_Library nice pictures for presentations http://www.sciencephoto.com/search?subtype=keywords&searchstring=transcription&oldsearchstring=ribosome&matchtype=&sort_results=&media_type=images&license=all&channel=all&Search.x=0&Search.y=0
</biblio>
</biblio>
 +
===Lecture Slides===
 +
*[http://openwetware.org/images/6/6a/Widespread_RNA_and_DNA.pptx Widespread RNA and DNA differences]
==Week 4: Functional Genomics==
==Week 4: Functional Genomics==
Line 129: Line 131:
*Base Excision Repair and Lesion-Dependent Subpathways for Repair of Oxidative DNA Damage http://www.ncbi.nlm.nih.gov/pubmed/20649466
*Base Excision Repair and Lesion-Dependent Subpathways for Repair of Oxidative DNA Damage http://www.ncbi.nlm.nih.gov/pubmed/20649466
*Intestinal Inflammation and Cancer http://www.ncbi.nlm.nih.gov/pubmed/21530747
*Intestinal Inflammation and Cancer http://www.ncbi.nlm.nih.gov/pubmed/21530747
 +
===Lecture Slides===
 +
*[http://openwetware.org/images/d/de/Inflammation_and_Cancer_background.pdf Background: Inflammation and Cancer]
==Week 9: Drug Development part 1 GIST==
==Week 9: Drug Development part 1 GIST==
Line 137: Line 141:
; See supplemental materials including excel spreadsheets and movies that accompany the main paper
; See supplemental materials including excel spreadsheets and movies that accompany the main paper
*Cancer: Oncogenes in context. http://www.nature.com/nature/journal/v467/n7317/full/467796a.html
*Cancer: Oncogenes in context. http://www.nature.com/nature/journal/v467/n7317/full/467796a.html
 +
 +
===Lecture Slides===
 +
*[http://openwetware.org/images/4/4c/ETV1_and_GIST_intro.pptx Introduction: GI Stromal Tumors and ETV1]
 +
*[http://openwetware.org/images/a/a4/GIST-_3-8-2012%281%29.pptx Results: GIST and ETV1]
==Week 10: No Class==
==Week 10: No Class==
Line 145: Line 153:
==Week 11: Drug Development part 2==
==Week 11: Drug Development part 2==
===Papers===
===Papers===
 +
*The secret ally: immunostimulation by anticancer drugs. http://www.ncbi.nlm.nih.gov/pubmed/22301798
===Bonus Materials===
===Bonus Materials===

Current revision

CANB 610 Advanced Topics in Cancer Biology

Home        People        Materials        Schedule        Help        Discussion       

    • IN PROGRESS**

Contents

Class Focus, Winter 2012

  1. Organization Meeting and Rules of Engagement
  2. Genomics and Cancer
  3. Genomic instability and Cancer
  4. Drug Discovery

Organizational Meeting: Introduction and Scheduling

Presentation Zen

  1. Slide Zen
  2. Delivery Zen
  3. Feel free to add links that help you

Evaluation Forms

Week 1: Tumor Sequencing, part 1

Papers

Error fetching PMID 22138691:
  1. Error fetching PMID 22138691: [Guo]

Bonus Materials

and then a bit of a leap:

Lecture Slides

Week 2: Tumor Sequencing, part 2

Papers

Error fetching PMID 21399628:
  1. Error fetching PMID 21399628: [Navin]

Bonus Materials

Lecture slides

Week 3: RNA sequencing

Papers

Error fetching PMID 21596952:
Error fetching PMID 17908822:
Error fetching PMID 19261174:
Error fetching PMID 19289445:
Error fetching PMID 20436464:
  1. Error fetching PMID 21596952: [Li-2011]
  2. Error fetching PMID 17908822: [RNA_Editing_in_cancer]
  3. Error fetching PMID 19261174: [bowtie]
  4. Error fetching PMID 19289445: [tophat]
All Medline abstracts: PubMed HubMed

Bonus Materials

  1. Very Few RNA and DNA Sequence Differences in the Human Transcriptome http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0025842 [Schrider-2011]
  2. Post on Paralogs and Splice Junctions http://www.genomesunzipped.org/2011/05/notes-on-the-evidence-for-extensive-rna-editing-in-humans.php [GenomesUnzipped]
  3. nice pictures for presentations http://www.sciencephoto.com/search?subtype=keywords&searchstring=transcription&oldsearchstring=ribosome&matchtype=&sort_results=&media_type=images&license=all&channel=all&Search.x=0&Search.y=0 [Science_Photo_Library]

Lecture Slides

Week 4: Functional Genomics

Papers

Error fetching PMID 21760589:
Error fetching PMID 21458673:
  1. Error fetching PMID 21760589: [possemato-2011]
  2. Error fetching PMID 21458673: [background]
All Medline abstracts: PubMed HubMed

http://www.nature.com/nrc/journal/v11/n9/full/nrc3128.html Jones, R. G. & Thompson, C. B. Tumor suppressors and cell metabolism: a recipe for cancer growth.Genes Dev. 23, 537–548 (2009)

Bonus Materials

Lecture slides

Introduction: Cancer Metabolism, Functional Genomics, and Breast Cancer
Results: Functional Genomics Reveal that the Serine Synthesis Pathway is Essential in Breast Cancer

Week 5: No Class

General Background for Genomic Instability and Cancer

Week 6: Chromothripsis

Papers

Error fetching PMID 21215367:
  1. Error fetching PMID 21215367: [Stephens-2011]

Bonus Materials

link to Cell podcast by the author

Lecture Slides

Week 7: Circadian rhythm and cancer

Papers

Bonus Materials

Presentations

Week 8: Inflammation and cancer

Papers

Bonus Materials

Lecture Slides

Week 9: Drug Development part 1 GIST

Papers

Bonus Materials

See supplemental materials including excel spreadsheets and movies that accompany the main paper

Lecture Slides

Week 10: No Class

Papers

Bonus Materials

Week 11: Drug Development part 2

Papers

Bonus Materials

Personal tools