CANB 610:Materials

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Week 8: Inflammation and cancer)
(Bonus Materials)
Line 122: Line 122:
===Bonus Materials===
===Bonus Materials===
Base Excision Repair and Lesion-Dependent Subpathways for Repair of Oxidative DNA Damage http://www.ncbi.nlm.nih.gov/pubmed/20649466
Base Excision Repair and Lesion-Dependent Subpathways for Repair of Oxidative DNA Damage http://www.ncbi.nlm.nih.gov/pubmed/20649466
 +
Intestinal Inflammation and Cancer http://www.ncbi.nlm.nih.gov/pubmed/21530747
==Week 9: TBA==
==Week 9: TBA==

Revision as of 23:04, 2 February 2012

CANB 610 Advanced Topics in Cancer Biology

Home        People        Materials        Schedule        Help        Discussion       

    • IN PROGRESS**

Contents

Class Focus, Winter 2012

  1. Organization Meeting and Rules of Engagement
  2. Genomics and Cancer
  3. Genomic instability and Cancer
  4. Drug Discovery

Organizational Meeting: Introduction and Scheduling

Presentation Zen

  1. Slide Zen
  2. Delivery Zen
  3. Feel free to add links that help you

Evaluation Forms

Week 1: Tumor Sequencing, part 1

Papers

Error fetching PMID 22138691:
  1. Error fetching PMID 22138691: [Guo]

Bonus Materials

and then a bit of a leap:

Lecture Slides

Week 2: Tumor Sequencing, part 2

Papers

Error fetching PMID 21399628:
  1. Error fetching PMID 21399628: [Navin]

Bonus Materials

Lecture slides

Week 3: RNA sequencing

Papers

Error fetching PMID 21596952:
Error fetching PMID 17908822:
Error fetching PMID 19261174:
Error fetching PMID 19289445:
Error fetching PMID 20436464:
  1. Error fetching PMID 21596952: [Li-2011]
  2. Error fetching PMID 17908822: [RNA_Editing_in_cancer]
  3. Error fetching PMID 19261174: [bowtie]
  4. Error fetching PMID 19289445: [tophat]
All Medline abstracts: PubMed HubMed

Bonus Materials

  1. Very Few RNA and DNA Sequence Differences in the Human Transcriptome http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0025842 [Schrider-2011]
  2. Post on Paralogs and Splice Junctions http://www.genomesunzipped.org/2011/05/notes-on-the-evidence-for-extensive-rna-editing-in-humans.php [GenomesUnzipped]
  3. nice pictures for presentations http://www.sciencephoto.com/search?subtype=keywords&searchstring=transcription&oldsearchstring=ribosome&matchtype=&sort_results=&media_type=images&license=all&channel=all&Search.x=0&Search.y=0 [Science_Photo_Library]

Week 4: Functional Genomics

Papers

Error fetching PMID 21760589:
Error fetching PMID 21458673:
  1. Error fetching PMID 21760589: [possemato-2011]
  2. Error fetching PMID 21458673: [background]
All Medline abstracts: PubMed HubMed

http://www.nature.com/nrc/journal/v11/n9/full/nrc3128.html Jones, R. G. & Thompson, C. B. Tumor suppressors and cell metabolism: a recipe for cancer growth.Genes Dev. 23, 537–548 (2009)

Bonus Materials

Lecture slides

Week 5: TBA

Papers

Bonus Materials

Lecture slides

Week 6: Chromothripsis

Papers

Error fetching PMID 21215367:
  1. Error fetching PMID 21215367: [Stephens-2011]

Bonus Materials

link to Cell podcast by the author

Lecture Slides

Week 7: Circadian rhythm and cancer

Papers

Bonus Materials

Week 8: Inflammation and cancer

Papers

Bonus Materials

Base Excision Repair and Lesion-Dependent Subpathways for Repair of Oxidative DNA Damage http://www.ncbi.nlm.nih.gov/pubmed/20649466 Intestinal Inflammation and Cancer http://www.ncbi.nlm.nih.gov/pubmed/21530747

Week 9: TBA

Papers

  1. = [pmid]

Bonus Materials

Week 10: TBA

Papers

  1. = [pmid]

Bonus Materials

Week 11: TBA

Papers

  1. = [pmid]

Bonus Materials

Personal tools