CH391L/S13/Assignments

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= For Monday, April 1st, 2013 =
= For Monday, April 1st, 2013 =
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===Papers for Discussion===
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<biblio>
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#Ott2008 pmid=18193059
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//Perfusion-decellularized matrix: using nature's platform to engineer a bioartificial heart.
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#Lu2009 pmid=19255432
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//Efficacy of previously resisted antibiotics restored by phage suppressing the SOS response in host.
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</biblio>
===New Topics===
===New Topics===

Revision as of 11:19, 27 March 2013


Contents

For Monday, January 28th, 2013

New Topics:

For Monday, February 4th, 2013

Topic Updates

Papers for Discussion

Error fetching PMID 19298678:
  1. Playing God in Frankenstein's Footsteps: Synthetic Biology and the Meaning of Life [ethics]
    For Bioethics

  2. Outlaw, hackers, victorian amateurs: diagnosing public participation in the life sciences today pdf [Kelty2010]
    For DIY Biology

  3. Error fetching PMID 19298678: [Endy2009]
    For BioBricks

New Topics

For Monday, February 11th, 2013

Topic Updates

Papers for Discussion

Error fetching PMID 18218864:
  1. Error fetching PMID 18218864: [Gibson2008]
    Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. For DNA synthesis and assembly

  2. http://igem.synbioreview.com/ [iGEMSoftware]
  3. http://2011.igem.org/Jamboree/Team_Abstracts [iGEMAbstracts]
    Find a useful or neat tool from a past iGEM software competition using one of these links. Test drive it if possible. Be able to briefly describe what it does to class. For CAD

New Topics

For Monday, February 18th, 2013

Topic Updates

  • Minimal / "clean" genomes (Evan)
  • Functional Nucleic Acids (Alvaro)

Papers for Discussion

Error fetching PMID 16645050:
Error fetching PMID 17884697:
Error fetching PMID 17150804:
  1. Error fetching PMID 16645050: [Posfai2006]
    Emergent properties of reduced-genome Escherichia coli. For minimal genomes.

  2. Error fetching PMID 17884697: [Ohuchi2007]
    The flexizyme system: a highly flexible tRNA aminoacylation tool for the translation apparatus. For in vitro selection.

  3. Error fetching PMID 17150804: [Murakami2006]
    Flexizyme as a versatile tRNA acylation catalyst and the application for translation. For in vitro selection.

All Medline abstracts: PubMed HubMed

New Topics

For Monday, February 25th, 2013

Papers for Discussion

Error fetching PMID 23394108:
Error fetching PMID 10988064:
  1. Error fetching PMID 23394108: [Risso2013]
    Hyperstability and substrate promiscuity in laboratory resurrections of Precambrian β-lactamases. For Ancestral protein reconstruction.

  2. Error fetching PMID 10988064: [Beja2000]
    Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. For Metagenomic bioprospecting.

All Medline abstracts: PubMed HubMed

New Topics

  • Directed protein evolution (Max)
  • Riboswitches (Kate)
  • Optogenetics (Sid)

For Monday, March 4th, 2013

Papers for Discussion

Error fetching PMID 9788996:
Error fetching PMID 23092157:
  1. Error fetching PMID 9788996: [Giver1998]
    Directed evolution of a thermostable esterase. For directed protein evolution.

  2. Error fetching PMID 23092157: [Davidson2012]
    Development of a 2,4-dinitrotoluene-responsive synthetic riboswitch in E. coli cells. For riboswitches.

All Medline abstracts: PubMed HubMed

New Topics

  • Quorum Sensing (Larry)
  • Biocontainment (Thomas)
  • New Marker Genes (Ben)
  • Optional: Biological material assembly and patterning - Belcher virus work (Marco)

For Monday, March 18th, 2013

Paper for Discussion

Error fetching PMID 22178928:
  1. Error fetching PMID 22178928: [Prindle2011]
    A sensing array of radically coupled genetic 'biopixels'.

New Topics

  • Algal Biofuels (Aurko)
  • Probiotics (Alvaro)
  • Brainstorm ideas for final projects!

For Monday, March 25th, 2013

Discuss preliminary research into topics for final projects. Decide on topics and groups.

Papers for Discussion

Error fetching PMID 12369203:
Error fetching PMID 23236148:
  1. Error fetching PMID 12369203: [Hillman2002]
    Genetically modified Streptococcus mutans for the prevention of dental caries.

  2. Error fetching PMID 23236148: [Tran2013]
    Production of unique immunotoxin cancer therapeutics in algal chloroplasts

All Medline abstracts: PubMed HubMed

New Topics

  • Synthetic Meat/Organs (Sid)
  • Phage Therapy (Neil)

For Monday, April 1st, 2013

Papers for Discussion

Error fetching PMID 18193059:
Error fetching PMID 19255432:
  1. Error fetching PMID 18193059: [Ott2008]
    Perfusion-decellularized matrix: using nature's platform to engineer a bioartificial heart.

  2. Error fetching PMID 19255432: [Lu2009]
    Efficacy of previously resisted antibiotics restored by phage suppressing the SOS response in host.

All Medline abstracts: PubMed HubMed

New Topics

  • Gas Vesicles (Larry)
  • DNA Computation (Tyler)
  • Artemisinin (Max)

For Monday, April 8th, 2013

New Topics

  • Biomaterials (Gabe)
  • Cell Printing / Scaffolding (Evan)
  • Genome Editing (Ben)

For Monday, April 15th, 2013

New Topics

  • Metabolic Engineering (Thomas)
  • Genetic Circuits / Single-Molecule / Single-Cell / something (Andre)

For Monday, April 22nd, 2013

New Topics

  • Molecular Gastronomie (Kate)
  • Mechanosensing (Kevin)
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