CH391L/S13/Assignments

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(For Monday, March 4th, 2013)
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= For Monday, March 4th, 2013 =
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==Papers for Discussion==
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===Papers for Discussion===
<biblio>
<biblio>
#Giver1998 pmid=9788996
#Giver1998 pmid=9788996
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==New Topics==
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===New Topics===
* Quorum Sensing (Larry)
* Quorum Sensing (Larry)
* Biocontainment (Thomas)
* Biocontainment (Thomas)

Revision as of 18:13, 2 March 2013


Contents

For Monday, January 28th, 2013

New Topics:

For Monday, February 4th, 2013

Topic Updates

Papers for Discussion

Error fetching PMID 19298678:
  1. Playing God in Frankenstein's Footsteps: Synthetic Biology and the Meaning of Life [ethics]
    For Bioethics

  2. Outlaw, hackers, victorian amateurs: diagnosing public participation in the life sciences today pdf [Kelty2010]
    For DIY Biology

  3. Error fetching PMID 19298678: [Endy2009]
    For BioBricks

New Topics

For Monday, February 11th, 2013

Topic Updates

Papers for Discussion

Error fetching PMID 18218864:
  1. Error fetching PMID 18218864: [Gibson2008]
    Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. For DNA synthesis and assembly

  2. http://igem.synbioreview.com/ [iGEMSoftware]
  3. http://2011.igem.org/Jamboree/Team_Abstracts [iGEMAbstracts]
    Find a useful or neat tool from a past iGEM software competition using one of these links. Test drive it if possible. Be able to briefly describe what it does to class. For CAD

New Topics

For Monday, February 18th, 2013

Topic Updates

  • Minimal / "clean" genomes (Evan)
  • Functional Nucleic Acids (Alvaro)

Papers for Discussion

Error fetching PMID 16645050:
Error fetching PMID 17884697:
Error fetching PMID 17150804:
  1. Error fetching PMID 16645050: [Posfai2006]
    Emergent properties of reduced-genome Escherichia coli. For minimal genomes.

  2. Error fetching PMID 17884697: [Ohuchi2007]
    The flexizyme system: a highly flexible tRNA aminoacylation tool for the translation apparatus. For in vitro selection.

  3. Error fetching PMID 17150804: [Murakami2006]
    Flexizyme as a versatile tRNA acylation catalyst and the application for translation. For in vitro selection.

All Medline abstracts: PubMed HubMed

New Topics

For Monday, February 25th, 2013

Papers for Discussion

Error fetching PMID 23394108:
Error fetching PMID 10988064:
  1. Error fetching PMID 23394108: [Risso2013]
    Hyperstability and substrate promiscuity in laboratory resurrections of Precambrian β-lactamases. For Ancestral protein reconstruction.

  2. Error fetching PMID 10988064: [Beja2000]
    Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. For Metagenomic bioprospecting.

All Medline abstracts: PubMed HubMed

New Topics

  • Directed protein evolution (Max)
  • Riboswitches (Kate)
  • Optogenetics (Sid)

For Monday, March 4th, 2013

Papers for Discussion

Error fetching PMID 9788996:
Error fetching PMID 23092157:
  1. Error fetching PMID 9788996: [Giver1998]
    Directed evolution of a thermostable esterase. For directed protein evolution.

  2. Error fetching PMID 23092157: [Davidson2012]
    Development of a 2,4-dinitrotoluene-responsive synthetic riboswitch in E. coli cells. For riboswitches.

All Medline abstracts: PubMed HubMed

New Topics

  • Quorum Sensing (Larry)
  • Biocontainment (Thomas)
  • New Marker Genes (Ben)
  • Optional: Biological material assembly and patterning - Belcher virus work (Marco)

For Monday, March 18th, 2013

Brainstorm ideas for final projects.

For Monday, March 25th, 2013

Topics and groups for final projects due.

For Monday, April 1st, 2013

For Monday, April 8th, 2013

For Monday, April 15th, 2013

For Monday, April 22nd, 2013

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