CH391L/S13/Introduction - Revision history

Jeffrey E. Barrick: /* Synthetic Biology Conferences/Sessions */

Jeffrey E. Barrick — Mon, 18 Feb 2013 19:36:04 GMT

Synthetic Biology Conferences/Sessions

←Older revision		Revision as of 19:36, 18 February 2013
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	** Ex: circuits, DNA computing, metabolic engineering		** Ex: circuits, DNA computing, metabolic engineering
	** Rewriting biological sequences in ways that could not be achieved (quickly) by natural evolution		** Rewriting biological sequences in ways that could not be achieved (quickly) by natural evolution
		+
		+	== Synthetic Biology Workshops ==
		+
		+	* [http://meetings.cshl.edu/courses/2013/c-synbio13.shtml 2003 Cold Spring Harbor Laboratory Synthetic Biology Course]

	== Synthetic Biology Conferences/Sessions ==		== Synthetic Biology Conferences/Sessions ==

Benjamin Gilman at 17:46, 4 February 2013

Benjamin Gilman — Mon, 04 Feb 2013 17:46:54 GMT

←Older revision		Revision as of 17:46, 4 February 2013
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	\|-		\|-
	\| 1976 \|\| First genome sequenced- Bacteriophage MS2 <cite>Fiers1976</cite>		\| 1976 \|\| First genome sequenced- Bacteriophage MS2 <cite>Fiers1976</cite>
		+	\|-
		+	\| 1981 \|\| Introduction of phosphoramidite method of DNA oligonucleotide synthesis. <cite>Matteucci1981</cite>
	\|-		\|-
	\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>		\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>
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	#Fiers1976 Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.		#Fiers1976 Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.
	http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf		http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf
		+	#Matteucci1981 Matteucci MD and Caruthers MH. 1981. Synthesis of Deoxyoligonucleotides on a Polymer Support. http://pubs.acs.org/doi/abs/10.1021/ja00401a041?prevSearch=matteucci%252C%2Bcaruthers%252C%2B1981&searchHistoryKey=
	</biblio>		</biblio>

Kevin Baldridge at 07:57, 1 February 2013

Kevin Baldridge — Fri, 01 Feb 2013 07:57:36 GMT

←Older revision		Revision as of 07:57, 1 February 2013
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	\| 2006 \|\| Human Genome Project completed <cite>Gregory2006</cite>		\| 2006 \|\| Human Genome Project completed <cite>Gregory2006</cite>
	\|-		\|-
-	\| 2007 \|\| First ~~publication~~ of CAD software for Synthetic Biology ([http://www.genocad.org GenoCAD]) <cite>Cai2007</cite>	+	\| 2007 \|\| First application of context-free grammars in CAD software for Synthetic Biology ([http://www.genocad.org GenoCAD]) <cite>Cai2007</cite>
	\|-		\|-
	\| 2008 \|\| First synthetic genome assembled <cite>Gibson2008</cite>		\| 2008 \|\| First synthetic genome assembled <cite>Gibson2008</cite>

Siddharth Das: /* Timeline of Synthetic Biology */

Siddharth Das — Thu, 31 Jan 2013 19:12:34 GMT

Timeline of Synthetic Biology

←Older revision		Revision as of 19:12, 31 January 2013
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	\| 1972 \|\| First publication on recombinant DNA <cite>Jackson1972</cite>		\| 1972 \|\| First publication on recombinant DNA <cite>Jackson1972</cite>
	\|-		\|-
-	\| 1976 \|\| First genome sequenced- Bacteriophage MS2 <cite>Fiers1976<cite>	+	\| 1976 \|\| First genome sequenced- Bacteriophage MS2 <cite>Fiers1976</cite>
	\|-		\|-
	\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>		\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>

Siddharth Das: /* Timeline of Synthetic Biology */

Siddharth Das — Thu, 31 Jan 2013 19:11:49 GMT

Timeline of Synthetic Biology

←Older revision		Revision as of 19:11, 31 January 2013
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	\|-		\|-
	\| 1972 \|\| First publication on recombinant DNA <cite>Jackson1972</cite>		\| 1972 \|\| First publication on recombinant DNA <cite>Jackson1972</cite>
		+	\|-
		+	\| 1976 \|\| First genome sequenced- Bacteriophage MS2 <cite>Fiers1976<cite>
	\|-		\|-
	\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>		\|1983 \|\| First genetically modified plant is produced <cite>Fraley</cite>

Siddharth Das: /* References */

Siddharth Das — Thu, 31 Jan 2013 19:07:30 GMT

References

←Older revision		Revision as of 19:07, 31 January 2013
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	#Gibson2008 pmid=18218864		#Gibson2008 pmid=18218864
	#Cello2002 pmid=12114528		#Cello2002 pmid=12114528
-	#~~Fiers1973~~ Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.	+	#Fiers1976 Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.
	http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf		http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf
	</biblio>		</biblio>

Siddharth Das: /* References */

Siddharth Das — Thu, 31 Jan 2013 19:07:06 GMT

References

←Older revision		Revision as of 19:07, 31 January 2013
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	#Gibson2008 pmid=18218864		#Gibson2008 pmid=18218864
	#Cello2002 pmid=12114528		#Cello2002 pmid=12114528
-	#Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.	+	#Fiers1973 Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.
	http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf		http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf
	</biblio>		</biblio>

Siddharth Das: /* References */

Siddharth Das — Thu, 31 Jan 2013 19:02:31 GMT

References

←Older revision		Revision as of 19:02, 31 January 2013
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	#Gibson2008 pmid=18218864		#Gibson2008 pmid=18218864
	#Cello2002 pmid=12114528		#Cello2002 pmid=12114528
		+	#Fiers, W et al. 1976. Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.
		+	http://www.regensci.org/twiki/pub/IGEM2009/BrainStorming/ms2article.pdf
	</biblio>		</biblio>

Evan J. Weaver: /* References */

Evan J. Weaver — Mon, 28 Jan 2013 18:28:38 GMT

References

←Older revision		Revision as of 18:28, 28 January 2013
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	//Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of ''Escherichia coli''.		//Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of ''Escherichia coli''.
	#Elowitz2000 pmid=10659856		#Elowitz2000 pmid=10659856
		+	#Fraley Fraley, RT et al. (1983) Expression of bacterial genes in plant cells. Proc. NatL. Acad. Sci. USA 80: 4803–4807 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC384133/
	#Knight2003 Knight, T. Idempotent Vector Design for Standard Assembly of Biobricks. 2003.		#Knight2003 Knight, T. Idempotent Vector Design for Standard Assembly of Biobricks. 2003.
	http://hdl.handle.net/1721.1/21168		http://hdl.handle.net/1721.1/21168

Aurko Dasgupta: /* References */

Aurko Dasgupta — Mon, 28 Jan 2013 18:22:35 GMT

References

←Older revision		Revision as of 18:22, 28 January 2013
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	<biblio>		<biblio>
-	#Smith70 Smith H and Welcox KW. A Restriction enzyme from Hemophilus influenzae ☆: I. Purification and general properties. 1970. pmid:5312500	+	#Smith70 Smith H and Welcox KW. A Restriction enzyme from Hemophilus influenzae ☆: I. Purification and general properties. 1970. pmid:5312500 http://www.sciencedirect.com/science/article/pii/002228367090149X
-	#Jackson1972 pmid=4342968	+	#Jackson1972 pmid=4342968 http://www.sciencedirect.com/science/article/pii/002228367090149X
	//Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of ''Escherichia coli''.		//Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of ''Escherichia coli''.
	#Elowitz2000 pmid=10659856		#Elowitz2000 pmid=10659856
	#Knight2003 Knight, T. Idempotent Vector Design for Standard Assembly of Biobricks. 2003.		#Knight2003 Knight, T. Idempotent Vector Design for Standard Assembly of Biobricks. 2003.
	http://hdl.handle.net/1721.1/21168		http://hdl.handle.net/1721.1/21168
-	~~#Fraley, RT et al. (1983) Expression of bacterial genes in plant cells. Proc. NatL. Acad. Sci. USA 80: 4803–4807 pmcid: PMC384133 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC384133/~~	+	#Smith2003 pmid=14657399
-	#Smith2003 pmid=14657399	+
	//Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.		//Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.
	#Judson1979 isbn=0879694785		#Judson1979 isbn=0879694785