CH391L/S13/Topics - Revision history

Jeffrey E. Barrick at 20:49, 15 April 2013

Jeffrey E. Barrick — Mon, 15 Apr 2013 20:49:11 GMT

Neil R Gottel — Mon, 18 Mar 2013 19:07:21 GMT

Synthetic Biology Part II

←Older revision		Revision as of 19:07, 18 March 2013
Line 30:		Line 30:
	gas vesicles <br>		gas vesicles <br>
	dental probiotics (Al) <br>		dental probiotics (Al) <br>
-	mussel protein bioadhesive ~~(Neil)~~ <br>	+	mussel protein bioadhesive <br>
	bioremediation <br>		bioremediation <br>
	metabolic engineering <br>		metabolic engineering <br>

Neil R Gottel — Mon, 18 Mar 2013 19:00:27 GMT

Synthetic Biology Part II

←Older revision		Revision as of 19:00, 18 March 2013
Line 30:		Line 30:
	gas vesicles <br>		gas vesicles <br>
	dental probiotics (Al) <br>		dental probiotics (Al) <br>
-	mussel protein bioadhesive <br>	+	mussel protein bioadhesive (Neil) <br>
	bioremediation <br>		bioremediation <br>
	metabolic engineering <br>		metabolic engineering <br>

Evan J. Weaver — Tue, 05 Mar 2013 19:38:17 GMT

←Older revision		Revision as of 19:38, 5 March 2013
Line 37:		Line 37:
	biomineralization <br>		biomineralization <br>
	lab grown meat/organs <br>		lab grown meat/organs <br>
-	cell printing/scaffolding <br>	+	cell printing/scaffolding (Evan)<br>
		+	genetic circuits <br>

	=== ''In vitro'' Biology ===		=== ''In vitro'' Biology ===
Line 139:		Line 140:

	http://fastml.tau.ac.il/		http://fastml.tau.ac.il/
		+
		+	===Genetic Circuits===
		+
		+	Stuff like oscillators,double negative genetic circuits, etc.

	== Other ==		== Other ==

Gabriel Wu — Mon, 04 Mar 2013 23:11:18 GMT

New Topics

←Older revision		Revision as of 23:11, 4 March 2013
Line 22:		Line 22:

	== New Topics ==		== New Topics ==
		+
		+	===Synthetic Biology Part II===
		+	Algae/Biofuels (aurko) <br>
		+	DNA computation/fabrication (Tyler) <br>
		+	Spider goats <br>
		+	CRISPR genome editing (Ben) <br>
		+	gas vesicles <br>
		+	dental probiotics (Al) <br>
		+	mussel protein bioadhesive <br>
		+	bioremediation <br>
		+	metabolic engineering <br>
		+	molecular gastronomy <br>
		+	mechanoreceptors <br>
		+	biomineralization <br>
		+	lab grown meat/organs <br>
		+	cell printing/scaffolding <br>

	=== ''In vitro'' Biology ===		=== ''In vitro'' Biology ===

Jeffrey E. Barrick — Mon, 25 Feb 2013 23:18:15 GMT

CRISPR Genome Editing

←Older revision		Revision as of 23:18, 25 February 2013
Line 106:		Line 106:
	Papers described here		Papers described here
	http://www.sciencemag.org/content/339/6121/768.summary		http://www.sciencemag.org/content/339/6121/768.summary
		+
		+	===Gas Vesicles===
		+
		+	Would be a new topic no one has chosen before.

	== Topic Updates ==		== Topic Updates ==

Jeffrey E. Barrick — Sun, 17 Feb 2013 23:46:28 GMT

Biocontainment

←Older revision		Revision as of 23:46, 17 February 2013
Line 102:		Line 102:
	//Preparing synthetic biology for the world		//Preparing synthetic biology for the world
	</biblio>		</biblio>
		+
		+	===CRISPR Genome Editing===
		+	Papers described here
		+	http://www.sciencemag.org/content/339/6121/768.summary

	== Topic Updates ==		== Topic Updates ==

Neil R Gottel — Sun, 03 Feb 2013 00:18:10 GMT

New Topics

←Older revision		Revision as of 00:18, 3 February 2013
Line 22:		Line 22:

	== New Topics ==		== New Topics ==
		+
		+	=== ''In vitro'' Biology ===
		+
		+	[http://www.ncbi.nlm.nih.gov/pubmed?term=Validation%20of%20an%20entirely%20in%20vitro%20approach%20for%20rapid%20prototyping%20of%20DNA%20regulatory%20elements%20for%20synthetic%20biology Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology]<cite>invitro</cite>
		+	<biblio>
		+	#invitro pmid=23371936
		+	// Using cell-free extracts of ''E. coli'' to eliminate transformation/selection/culturing/purification steps when testing new DNA parts and genetic circuits. Additionally, ''In vitro'' performance of the tested parts had a clear correlation to ''in vivo'' performance.
		+	</biblio>

	=== Algal biofuels ===		=== Algal biofuels ===

Jeffrey E. Barrick — Thu, 31 Jan 2013 01:36:13 GMT

New Topics

←Older revision		Revision as of 01:36, 31 January 2013
Line 88:		Line 88:
	===Bioethics===		===Bioethics===
	Asilomar:This likely fits into some ethics section. But would be useful to get a nice, reasonably detailed overview of this conference. It is referenced often in synthetic biology circles as a model for public disclosure and internal consistency within a field. Would be nice to understand where/how the analogy fits and maybe where it doesn't? <br>		Asilomar:This likely fits into some ethics section. But would be useful to get a nice, reasonably detailed overview of this conference. It is referenced often in synthetic biology circles as a model for public disclosure and internal consistency within a field. Would be nice to understand where/how the analogy fits and maybe where it doesn't? <br>
		+
		+	===Biocontainment===
		+	<biblio>
		+	#Moe-Behrens2013 pmid=23355834
		+	//Preparing synthetic biology for the world
		+	</biblio>

	== Topic Updates ==		== Topic Updates ==

Jeffrey E. Barrick — Mon, 28 Jan 2013 21:39:03 GMT

New Topics

←Older revision		Revision as of 21:39, 28 January 2013
Line 80:		Line 80:

	===Dental Probiotics===		===Dental Probiotics===
-	~~===Bioethics===~~
-	Asilomar:This likely fits into some ethics section. But would be useful to get a nice, reasonably detailed overview of this conference. It is referenced often in synthetic biology circles as a model for public disclosure and internal consistency within a field. Would be nice to understand where/how the analogy fits and maybe where it doesn't? <br>

		+	<biblio>
		+	#Russell2012 pmid=12369203
		+	//Genetically modified Streptococcus mutans for the prevention of dental caries
		+	</biblio>

		+	===Bioethics===
		+	Asilomar:This likely fits into some ethics section. But would be useful to get a nice, reasonably detailed overview of this conference. It is referenced often in synthetic biology circles as a model for public disclosure and internal consistency within a field. Would be nice to understand where/how the analogy fits and maybe where it doesn't? <br>

	== Topic Updates ==		== Topic Updates ==