CHE.496/2008/Assignments: Difference between revisions

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==Assignment 4==
==Assignment 4==
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# ''Genetic parts to program bacteria''
# ''Designing biological systems''
# ''Biology by design: Reduction and synthesis of cellular components and behavior''
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==Assignment 5==
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# ''A synthetic oscillatory network of transcriptional regulators''
# ''A synthetic oscillatory network of transcriptional regulators''
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# ''Engineered gene circuits''
# ''Engineered gene circuits''
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==Assignment 5==
==Assignment 6==
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# ''Synthetic biology: New engineering rules for an emerging discipline''
# ''Synthetic biology: New engineering rules for an emerging discipline''
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# ''Fast, cheap and somewhat in control''
# ''Fast, cheap and somewhat in control''
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==Assignment 6==
==Assignment 7==
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# ''Systems biology as a foundation for genome-scale synthetic biology''
# ''Systems biology as a foundation for genome-scale synthetic biology''
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# Chapter 4: High-throughout proteomics
# Chapter 4: High-throughout proteomics
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==Assignment 7==
==Assignment 8==
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<font color=blue>
# Chapter 5: Bioinformatics and phylogenetics
# Chapter 5: Bioinformatics and phylogenetics
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# Chapter 8: In silico genome-scale metabolic models: the constraint-based approach
# Chapter 8: In silico genome-scale metabolic models: the constraint-based approach
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==Assignment 8==
==Assignment 9==
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<font color=green>
# Chapter 9: Modeling the dynamics of genetic regulatory networks
# Chapter 9: Modeling the dynamics of genetic regulatory networks
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# Chapter 13: Synthetic biology: putting engineering into bioengineering
# Chapter 13: Synthetic biology: putting engineering into bioengineering
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==Assignment 9==
==Assignment 10==
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<font color=green>
# Chapter 14: Rationales of gene design and de novo gene construction
# Chapter 14: Rationales of gene design and de novo gene construction
# Chapter 16: Synthetic genetic networks
# Chapter 16: Synthetic genetic networks
# Chapter 21: Systems biology and synthetic biology in the post genomic era
# Chapter 21: Systems biology and synthetic biology in the post genomic era
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==Assignment 10==
<font color=grey>
# ''Genetic parts to program bacteria''
# ''Designing biological systems''
# ''Biology by design: Reduction and synthesis of cellular components and behavior''
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==Assignment 11==
==Assignment 11==
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# ''High-yield H2 production from starch and water by a synthetic enzymatic pathway''
# ''Production of isoprenoid pharmaceuticals by engineered microbes''
# ''Environmentally controlled invasion of cancer cells by engineered'' bacteria
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==Assignment 12==
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<font color=red>
# ''DNA synthesis and biological security''
# ''DNA synthesis and biological security''
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# ''Synthetic biology: Navigating the challenges ahead''
# ''Synthetic biology: Navigating the challenges ahead''
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==Assignment 13==
==Assignment 12==
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<font color=red>
# ''Economics of synthetic biology''
# ''Economics of synthetic biology''
# ''Synthetic biology: Caught between property rights, the public domain, & the commons''
# ''Synthetic biology: Caught between property rights, the public domain, & the commons''
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Revision as of 10:04, 3 July 2007

CHE.496: Biological Systems Design Seminar

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Assignment 1

  1. Chapter 1: Philosophical viewpoints on the new biology
  2. Chapter 2: Basics of molecular biology, genetic engineering and metabolic engineering

Assignment 2

  1. Intelligent design
  2. Extreme genetic engineering: An introduction to synthetic biology
  3. A partnership between biology and engineering

Assignment 3

  1. Idempotent vector design for standard assembly of biobricks
  2. Foundations for engineering biology
  3. Synthetic biology–putting engineering into biology

Assignment 4

  1. Genetic parts to program bacteria
  2. Designing biological systems
  3. Biology by design: Reduction and synthesis of cellular components and behavior

Assignment 5

  1. A synthetic oscillatory network of transcriptional regulators
  2. Construction of a genetic toggle switch in Escherichia coli
  3. Engineered gene circuits

Assignment 6

  1. Synthetic biology: New engineering rules for an emerging discipline
  2. Programming and engineering biological networks
  3. Fast, cheap and somewhat in control

Assignment 7

  1. Systems biology as a foundation for genome-scale synthetic biology
  2. Chapter 3: High-throughput technologies and functional genomics
  3. Chapter 4: High-throughout proteomics

Assignment 8

  1. Chapter 5: Bioinformatics and phylogenetics
  2. Chapter 7: From recombinant genes to recombinant genomes for systems biology
  3. Chapter 8: In silico genome-scale metabolic models: the constraint-based approach

Assignment 9

  1. Chapter 9: Modeling the dynamics of genetic regulatory networks
  2. Chapter 12: Systems biotechnology: applications of in silico modeling
  3. Chapter 13: Synthetic biology: putting engineering into bioengineering

Assignment 10

  1. Chapter 14: Rationales of gene design and de novo gene construction
  2. Chapter 16: Synthetic genetic networks
  3. Chapter 21: Systems biology and synthetic biology in the post genomic era

Assignment 11

  1. DNA synthesis and biological security
  2. The promises and perils of synthetic biology
  3. Synthetic biology: Navigating the challenges ahead

Assignment 12

  1. Economics of synthetic biology
  2. Synthetic biology: Caught between property rights, the public domain, & the commons

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