CHE.496/2008/Assignments: Difference between revisions
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==Assignment 5: Bioinformatics and systems biology== | ==Assignment 5: Bioinformatics and systems biology== | ||
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# Systems biology as a foundation for genome-scale synthetic biology | # Systems biology as a foundation for genome-scale synthetic biology | ||
# Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information | # Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information | ||
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==Assignment 6: Practical applications== | ==Assignment 6: Practical applications== | ||
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# Advances in synthetic biology: on the path from prototypes to applications | # Advances in synthetic biology: on the path from prototypes to applications | ||
# Molecular switches for cellular sensors | # Molecular switches for cellular sensors | ||
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==Assignment 7: Societal implications== | ==Assignment 7: Societal implications== | ||
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# The promises and perils of synthetic biology | # The promises and perils of synthetic biology | ||
# Synthetic biology: Navigating the challenges ahead | # Synthetic biology: Navigating the challenges ahead | ||
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==Assignment 9: Cases studies in synthetic biology== | ==Assignment 9: Cases studies in synthetic biology== | ||
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# Environmentally controlled invasion of cancer cells by engineered bacteria | # Environmentally controlled invasion of cancer cells by engineered bacteria | ||
# Production of isoprenoid pharmaceuticals by engineered microbes | # Production of isoprenoid pharmaceuticals by engineered microbes | ||
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==Assignment 10: Genetic circuit engineering== | ==Assignment 10: Genetic circuit engineering== | ||
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# A synthetic oscillatory network of transcriptional regulators | # A synthetic oscillatory network of transcriptional regulators | ||
# Construction of a genetic toggle switch in Escherichia coli | # Construction of a genetic toggle switch in Escherichia coli | ||
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==Assignment 11: Metabolic pathway engineering== | ==Assignment 11: Metabolic pathway engineering== | ||
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# Bioengineering novel in vitro metabolic pathways using synthetic biology | # Bioengineering novel in vitro metabolic pathways using synthetic biology | ||
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==Assignment 12: Biological network engineering== | ==Assignment 12: Biological network engineering== | ||
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# Programming and engineering biological networks | # Programming and engineering biological networks | ||
# Modular approaches to expanding the functions of living matter | # Modular approaches to expanding the functions of living matter | ||
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==Assignment 13: Systems biology and the omic sciences== | ==Assignment 13: Systems biology and the omic sciences== | ||
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==Assignment 14: Mathematical biology== | ==Assignment 14: Mathematical biology== | ||
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==Assignment 15: Computational biology== | ==Assignment 15: Computational biology== | ||
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==Assignment 16: Metabolic flux analysis== | ==Assignment 16: Metabolic flux analysis== | ||
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==Assignment 17: Genome-scale metabolic models== | ==Assignment 17: Genome-scale metabolic models== | ||
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==Assignment 18: Modeling genetic regulatory networks== | ==Assignment 18: Modeling genetic regulatory networks== |
Revision as of 08:56, 8 August 2007
Assignment 1: Synthetic biology overview
- Extreme genetic engineering: An introduction to synthetic biology
- Intelligent Life
Assignment 2: Foundational technologies
- Foundations for engineering biology
- A partnership between biology and engineering
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology
- Synthetic biology: New engineering rules for an emerging discipline
Assignment 4: Biobricks and genetic programming
- Idempotent vector design for standard assembly of biobricks
- Designing biological systems
- Biology by design: Reduction and synthesis of cellular components and behavior
Assignment 5: Bioinformatics and systems biology
- Systems biology as a foundation for genome-scale synthetic biology
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications
- Molecular switches for cellular sensors
Assignment 7: Societal implications
- The promises and perils of synthetic biology
- Synthetic biology: Navigating the challenges ahead
- Synthetic biology: Caught between property rights, the public domain, & the commons
- Economics of synthetic biology
- DNA synthesis and biological security
- Characterization of the reconstructed 1918 Spanish influenza pandemic virus
Assignment 8: Synthetic genes, biological machines, and minimal genomes
- Genetic parts to program bacteria
- Codon bias and heterologous protein expression
- Fast, cheap and somewhat in control
- Global transposon mutagenesis and a minimal mycoplasma genome
Assignment 9: Cases studies in synthetic biology
- Environmentally controlled invasion of cancer cells by engineered bacteria
- Production of isoprenoid pharmaceuticals by engineered microbes
Assignment 10: Genetic circuit engineering
- A synthetic oscillatory network of transcriptional regulators
- Construction of a genetic toggle switch in Escherichia coli
- Engineered gene circuits
Assignment 11: Metabolic pathway engineering
- Bioengineering novel in vitro metabolic pathways using synthetic biology
Assignment 12: Biological network engineering
- Programming and engineering biological networks
- Modular approaches to expanding the functions of living matter
Assignment 13: Systems biology and the omic sciences
Assignment 14: Mathematical biology
Assignment 15: Computational biology
Assignment 16: Metabolic flux analysis
Assignment 17: Genome-scale metabolic models
Assignment 18: Modeling genetic regulatory networks
Assignment 19: Systems biotechnology