CHE.496/2008/Assignments: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
GMcArthurIV (talk | contribs) No edit summary |
GMcArthurIV (talk | contribs) No edit summary |
||
Line 7: | Line 7: | ||
====Assignment 1: Synthetic biology overview==== | ====Assignment 1: Synthetic biology overview==== | ||
<font color=blue> | <font color=blue> | ||
# '''Intelligent Life | # '''Intelligent Life [http://sciencereview.berkeley.edu/articles.php?issue=8&article=synthbio link] | ||
# '''Extreme genetic engineering: an introduction to synthetic biology | # '''Extreme genetic engineering: an introduction to synthetic biology [http://www.etcgroup.org/en/materials/publications.html?pub_id=602 link] | ||
</font> | </font> | ||
====Assignment 2: Foundational technologies==== | ====Assignment 2: Foundational technologies==== |
Revision as of 20:15, 8 November 2007
Assigned Readings
Assignment 1: Synthetic biology overview
Assignment 2: Foundational technologies
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology link
- Synthetic biology: new engineering rules for an emerging discipline link
Assignment 4: Genetic programming
- Idempotent vector design for standard assembly of biobricks link
- Genetic parts to program bacteria link
Assignment 5: Natural biological parts
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information
- Codon bias and heterologous protein expression
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications link
- Molecular switches for cellular sensors
Assignment 7: Social implications
- The promises and perils of synthetic biology
- DNA synthesis and biological security
Assignment 8: Engineering biology
- A partnership between biology and engineering link
- Fast, cheap and somewhat in control
Assignment 9: Biological machines
- Designing biological systems
- Biology by design: Reduction and synthesis of cellular components and behavior
Assignment 10: Minimal genomes
- Essential genes of a minimal bacterium
- Leaner and meaner genomes in E. coli
Assignment 11: Minimal cells
- Toward synthesis of a minimal cell
- Rebuilding microbial genomes
Assignment 12: Genetic circuit engineering
- A synthetic oscillatory network of transcriptional regulators
- Construction of a genetic toggle switch in Escherichia coli
Assignment 13: Genetic circuit engineering
- Environmentally controlled invasion of cancer cells by engineered bacteria
- Environmental signal integration by a modular AND gate
Assignment 14: Metabolic pathway engineering
- Production of isoprenoid pharmaceuticals by engineered microbes
- Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
Assignment 15: Systems biology
- The evolution of molecular biology into systems biology
- Integrating 'omic information: A bridge between genomics and systems biology
- Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
Assignment 16: Systems biology and synthetic biology
- Systems biology as a foundation for genome-scale synthetic biology
- From systems biology to synthetic biology
- Modular approaches to expanding the functions of living matter
Assignment 17: Computational Biology
- Modelling cellular behaviour
- Bioinformatics analysis for genome design and synthetic biology
Assignment 18: Biological networks
- Biological networks
- Programming and engineering biological networks
Assignment 19: Metabolic modeling
- Use of genome-scale microbial models for metabolic engineering
- Global physiological understanding and metabolic engineering of microorganisms based on omics studies
- Microbial regulatory and metabolic networks
Assignment 20: RNA synthetic biology
- RNA synthetic biology
- RNA and RNP as new molecular parts in synthetic biology
Assignment 21: The future of synthetic biology
- Synthetic biology: Navigating the challenges ahead
- Synthetic biology through the prism of scenarios