CHE.496/2008/Assignments: Difference between revisions
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# '''Integrating 'omic information: A bridge between genomics and systems biology | # '''Integrating 'omic information: A bridge between genomics and systems biology | ||
<font color=red> | <font color=red> | ||
====Assignment | ====Assignment 17: Systems biology and synthetic biology==== | ||
# '''Systems biology as a foundation for genome-scale synthetic biology | # '''Systems biology as a foundation for genome-scale synthetic biology | ||
# '''From systems biology to synthetic biology | # '''From systems biology to synthetic biology | ||
<font color=red> | <font color=red> | ||
====Assignment | ====Assignment 18: Systems biology and synthetic biology==== | ||
# '''Biological networks | # '''Biological networks | ||
# '''Programming and engineering biological networks | # '''Programming and engineering biological networks | ||
<font color=red> | <font color=red> | ||
====Assignment | ====Assignment 19: Computational Biology==== | ||
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# '''From molecular to modular cell biology | # '''From molecular to modular cell biology | ||
# '''Modelling cellular behaviour | # '''Modelling cellular behaviour | ||
</font> | </font> | ||
====Assignment | ====Assignment 20: Computational biology==== | ||
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# '''Bioinformatics analysis for genome design and synthetic biology | # '''Bioinformatics analysis for genome design and synthetic biology | ||
# '''Large-scale mapping and validation of ''Escherichia coli'' transcriptional regulation from a compendium of expression profiles | # '''Large-scale mapping and validation of ''Escherichia coli'' transcriptional regulation from a compendium of expression profiles | ||
# '''Use of genome-scale microbial models for metabolic engineering | # '''Use of genome-scale microbial models for metabolic engineering | ||
# '''Global physiological understanding and metabolic engineering of microorganisms based on omics studies | # '''Global physiological understanding and metabolic engineering of microorganisms based on omics studies | ||
# '''Microbial regulatory and metabolic networks | # '''Microbial regulatory and metabolic networks | ||
# '''Modular approaches to expanding the functions of living matter | # '''Modular approaches to expanding the functions of living matter | ||
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Revision as of 17:59, 8 November 2007
Assigned Readings
Assignment 1: Synthetic biology overview
- Extreme genetic engineering: An introduction to synthetic biology
- Intelligent Life
Assignment 2: Foundational technologies
- Foundations for engineering biology
- Economics of synthetic biology
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology
- Synthetic biology: New engineering rules for an emerging discipline
Assignment 4: Genetic programming
- Idempotent vector design for standard assembly of biobricks
- Genetic parts to program bacteria
Assignment 5: Natural biological parts
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information
- Codon bias and heterologous protein expression
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications
- Molecular switches for cellular sensors
Assignment 7: Social implications
- The promises and perils of synthetic biology
- DNA synthesis and biological security
Assignment 8: Biological machines
- Designing biological systems
- Biology by design: Reduction and synthesis of cellular components and behavior
Assignment 9: RNA synthetic biology
- RNA synthetic biology
- RNA and RNP as new molecular parts in synthetic biology
Assignment 10: Minimal genomes
- Essential genes of a minimal bacterium
- Leaner and meaner genomes in E. coli
Assignment 11: Minimal cells
- Toward synthesis of a minimal cell
- Rebuilding microbial genomes
Assignment 12: Genetic circuit engineering
- A synthetic oscillatory network of transcriptional regulators
- Construction of a genetic toggle switch in Escherichia coli
Assignment 13: Genetic circuit engineering
- Environmentally controlled invasion of cancer cells by engineered bacteria
- Environmental signal integration by a modular AND gate
Assignment 14: Metabolic pathway engineering
- Production of isoprenoid pharmaceuticals by engineered microbes
- Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
Assignment 15: Systems biology
- A partnership between biology and engineering
- Fast, cheap and somewhat in control
Assignment 16: Systems biology and synthetic biology
- The evolution of molecular biology into systems biology
- Integrating 'omic information: A bridge between genomics and systems biology
Assignment 17: Systems biology and synthetic biology
- Systems biology as a foundation for genome-scale synthetic biology
- From systems biology to synthetic biology
Assignment 18: Systems biology and synthetic biology
- Biological networks
- Programming and engineering biological networks
Assignment 19: Computational Biology
- From molecular to modular cell biology
- Modelling cellular behaviour
Assignment 20: Computational biology
- Bioinformatics analysis for genome design and synthetic biology
- Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
- Use of genome-scale microbial models for metabolic engineering
- Global physiological understanding and metabolic engineering of microorganisms based on omics studies
- Microbial regulatory and metabolic networks
- Modular approaches to expanding the functions of living matter
Assignment 21: Systems biotechnology
- Synthetic biology: Navigating the challenges ahead
- Synthetic biology through the prism of scenarios