CHE.496/2008/Assignments: Difference between revisions
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====Assignment 15: Systems | ====Assignment 15: Systems biology==== | ||
# '''The evolution of molecular biology into systems biology | # '''The evolution of molecular biology into systems biology | ||
# '''Integrating 'omic information: A bridge between genomics and systems biology | # '''Integrating 'omic information: A bridge between genomics and systems biology | ||
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# '''From systems biology to synthetic biology | # '''From systems biology to synthetic biology | ||
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====Assignment 17: | ====Assignment 17: Biological networks==== | ||
# '''Biological networks | # '''Biological networks | ||
# '''Programming and engineering biological networks | # '''Programming and engineering biological networks | ||
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# '''Modelling cellular behaviour | # '''Modelling cellular behaviour | ||
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====Assignment 19: | ====Assignment 19: Metabolic modeling==== | ||
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# '''Bioinformatics analysis for genome design and synthetic biology | # '''Bioinformatics analysis for genome design and synthetic biology | ||
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# '''RNA and RNP as new molecular parts in synthetic biology | # '''RNA and RNP as new molecular parts in synthetic biology | ||
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====Assignment 21: | ====Assignment 21: The future of synthetic biology==== | ||
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# '''Synthetic biology: Navigating the challenges ahead | # '''Synthetic biology: Navigating the challenges ahead | ||
# '''Synthetic biology through the prism of scenarios | # '''Synthetic biology through the prism of scenarios |
Revision as of 18:18, 8 November 2007
Assigned Readings
Assignment 1: Synthetic biology overview
- Intelligent Life
- Extreme genetic engineering: an introduction to synthetic biology
Assignment 2: Foundational technologies
- Foundations for engineering biology
- Economics of synthetic biology
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology
- Synthetic biology: new engineering rules for an emerging discipline
Assignment 4: Genetic programming
- Idempotent vector design for standard assembly of biobricks
- Genetic parts to program bacteria
Assignment 5: Natural biological parts
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information
- Codon bias and heterologous protein expression
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications
- Molecular switches for cellular sensors
Assignment 7: Social implications
- The promises and perils of synthetic biology
- DNA synthesis and biological security
Assignment 8: Engineering biology
- A partnership between biology and engineering
- Fast, cheap and somewhat in control
Assignment 9: Biological machines
- Designing biological systems
- Biology by design: Reduction and synthesis of cellular components and behavior
Assignment 10: Minimal genomes
- Essential genes of a minimal bacterium
- Leaner and meaner genomes in E. coli
Assignment 11: Minimal cells
- Toward synthesis of a minimal cell
- Rebuilding microbial genomes
Assignment 12: Genetic circuit engineering
- A synthetic oscillatory network of transcriptional regulators
- Construction of a genetic toggle switch in Escherichia coli
Assignment 13: Genetic circuit engineering
- Environmentally controlled invasion of cancer cells by engineered bacteria
- Environmental signal integration by a modular AND gate
Assignment 14: Metabolic pathway engineering
- Production of isoprenoid pharmaceuticals by engineered microbes
- Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
Assignment 15: Systems biology
- The evolution of molecular biology into systems biology
- Integrating 'omic information: A bridge between genomics and systems biology
Assignment 16: Systems biology and synthetic biology
- Systems biology as a foundation for genome-scale synthetic biology
- From systems biology to synthetic biology
Assignment 17: Biological networks
- Biological networks
- Programming and engineering biological networks
Assignment 18: Computational Biology
- From molecular to modular cell biology
- Modelling cellular behaviour
Assignment 19: Metabolic modeling
- Bioinformatics analysis for genome design and synthetic biology
- Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
- Use of genome-scale microbial models for metabolic engineering
- Global physiological understanding and metabolic engineering of microorganisms based on omics studies
- Microbial regulatory and metabolic networks
- Modular approaches to expanding the functions of living matter
Assignment 20: RNA synthetic biology
- RNA synthetic biology
- RNA and RNP as new molecular parts in synthetic biology
Assignment 21: The future of synthetic biology
- Synthetic biology: Navigating the challenges ahead
- Synthetic biology through the prism of scenarios