CHE.496/2008/Schedule/Natural biological parts

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CHE.496: Biological Systems Design Seminar

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Natural biological parts

  • Intro to Gene Designer (George)


  • Discussion leader: Patrick


  • Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information link


    • Purpose: The paper reviews the area of Synthetic Biology – the design/development of biosystems founded on the synthesis of DNA as well as recent developments in the field.
      • Background material is given in the various fields and technologies (synthetic genes, DNA recombination tech, PCR and so on).
      • The process for creating a synthetic gene: target DNA is produced by programmed chemical synthesis of short oligonucleotides where longer DNA molecules are formed together via ligation, PCR, and doing either of the following:
        • Synthesizing the complete sequence and ligating the backbone
        • Synthesizing part of the sequence, leaving gaps in the fragile hybrid and filling in the gaps with DNA polymerase enzymes
      • In situ microarray synthesis represents a cost-effective technology that can combine pieces of DNA to form larger pieces of DNA in a cheaper and faster manner than older technologies.
  • Codon bias and heterologous protein expression link

Exercise: