CHE.496/2009/Assignments: Difference between revisions
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==Assigned Readings== | ==Assigned Readings== | ||
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===Assignment 1: Introduction=== | ===Assignment 1: Introduction=== | ||
* '''Synthetic biology: promises and challenges [http://www.nature.com/doifinder/10.1038/msb4100202 link] | * '''Synthetic biology: promises and challenges [http://www.nature.com/doifinder/10.1038/msb4100202 link] | ||
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# '''Advances in synthetic biology: on the path from prototypes to applications [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4GM45W4-2&_user=10&_coverDate=08%2F31%2F2005&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_usrid=10&md5=a52006fd41df553f10c641cf1bd30272 link] | # '''Advances in synthetic biology: on the path from prototypes to applications [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4GM45W4-2&_user=10&_coverDate=08%2F31%2F2005&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_usrid=10&md5=a52006fd41df553f10c641cf1bd30272 link] | ||
# '''Molecular switches for cellular sensors [http://eands.caltech.edu/articles/LXVII4/Smolke%20Feature.pdf link] | # '''Molecular switches for cellular sensors [http://eands.caltech.edu/articles/LXVII4/Smolke%20Feature.pdf link] | ||
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===Assignment 7: Engineering biology=== | ===Assignment 7: Engineering biology=== | ||
# '''A partnership between biology and engineering [http://www.nature.com/nbt/journal/v22/n10/full/nbt1004-1211.html link] | # '''A partnership between biology and engineering [http://www.nature.com/nbt/journal/v22/n10/full/nbt1004-1211.html link] | ||
# '''Fast, cheap and somewhat in control [http://genomics.lbl.gov/Stuff/Arkin_FastCheapGenomeBiology.pdf link] | # '''Fast, cheap and somewhat in control [http://genomics.lbl.gov/Stuff/Arkin_FastCheapGenomeBiology.pdf link] | ||
====Assignment 8: Biological machines==== | |||
# '''Designing biological systems [http://openwetware.org/images/7/7d/Drubin_2007.pdf link] | |||
# '''Biology by design: Reduction and synthesis of cellular components and behavior [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum link] | |||
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Revision as of 21:30, 9 March 2009
Assigned Readings
Assignment 1: Introduction
- Synthetic biology: promises and challenges link
Assignment 2: Foundational technologies
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology link
- Synthetic biology: new engineering rules for an emerging discipline link
Assignment 4: Genetic programming
- Idempotent vector design for standard assembly of biobricks link
- Genetic parts to program bacteria link
Assignment 5: Natural biological parts
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information link
- Codon bias and heterologous protein expression link
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications link
- Molecular switches for cellular sensors link
Assignment 7: Engineering biology
Assignment 8: Biological machines
- Designing biological systems link
- Biology by design: Reduction and synthesis of cellular components and behavior link
