CHE.496/2009/Assignments: Difference between revisions
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# '''Systems biology as a foundation for genome-scale synthetic biology [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 link] | # '''Systems biology as a foundation for genome-scale synthetic biology [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 link] | ||
# '''Network Benchmarking: A Happy Marriage between Systems and Synthetic Biology [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRP-4VXKM2P-3&_user=709071&_coverDate=03/27/2009&_alid=894022930&_rdoc=2&_fmt=full&_orig=mlkt&_cdi=6240&_st=17&_docanchor=&_ct=18&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=0901b0cd65d61d89e5486a080ad4e23f#sec1 link] | # '''Network Benchmarking: A Happy Marriage between Systems and Synthetic Biology [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRP-4VXKM2P-3&_user=709071&_coverDate=03/27/2009&_alid=894022930&_rdoc=2&_fmt=full&_orig=mlkt&_cdi=6240&_st=17&_docanchor=&_ct=18&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=0901b0cd65d61d89e5486a080ad4e23f#sec1 link] | ||
===Assignment | ===Assignment 13: Biological networks=== | ||
<font color=red> | <font color=red> | ||
# '''Biological networks [http://www.ecs.umass.edu/~mettu/ece697s/papers/systems%20biology/biological%20networks.pdf link] | # '''Biological networks [http://www.ecs.umass.edu/~mettu/ece697s/papers/systems%20biology/biological%20networks.pdf link] | ||
# '''Programming and engineering biological networks [http://lib.bioinfo.pl/pmid:16842994 link] | # '''Programming and engineering biological networks [http://lib.bioinfo.pl/pmid:16842994 link] | ||
</font> | </font> |
Latest revision as of 15:58, 5 April 2009
Assigned Readings
Assignment 1: Introduction
- Synthetic biology: promises and challenges link
Assignment 2: Foundational technologies
Assignment 3: Engineering principles
- Synthetic biology - putting engineering into biology link
- Synthetic biology: new engineering rules for an emerging discipline link
Assignment 4: Genetic programming
- Idempotent vector design for standard assembly of biobricks link
- Genetic parts to program bacteria link
Assignment 5: Natural biological parts
- Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information link
- Codon bias and heterologous protein expression link
Assignment 6: Practical applications
- Advances in synthetic biology: on the path from prototypes to applications link
- Molecular switches for cellular sensors link
Assignment 7: Engineering biology
Assignment 8: Biological machines
- Designing biological systems link
- Biology by design: Reduction and synthesis of cellular components and behavior link
Assignment 9: Genetic circuit engineering (part 1)
- A synthetic oscillatory network of transcriptional regulators link
- Construction of a genetic toggle switch in Escherichia coli link
Assignment 10: Genetic circuit engineering (part 2)
- Environmentally controlled invasion of cancer cells by engineered bacteria link
- Environmental signal integration by a modular AND gate link
Assignment 11: Metabolic pathway engineering
- Bioengineering novel in vitro metabolic pathways using synthetic biology link
- Synthetic biology for synthetic chemistry link
Assignment 12: Systems biology and synthetic biology
- Systems biology as a foundation for genome-scale synthetic biology link
- Network Benchmarking: A Happy Marriage between Systems and Synthetic Biology link
Assignment 13: Biological networks