CTR:Notebook/Migrant/2016/08/23: Difference between revisions

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* Sonication (2016-08-23)
* Sonication (2016-08-23)
**BioRuptor NGS: 4 cycles of 30 seconds on, 90 seconds off, High Power
**BioRuptor NGS: 4 cycles of 30 seconds on, 90 seconds off, High Power
[[CTR:60px|60px]]  
[[Image:Wholegenomesheared 08232016.JPG|60px]]  


1) 2uL 100bp low scale ladder,  
1) 2uL 100bp low scale ladder,  
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* End Repair and Size Selection- edited to size select for 400bp (2016-08-24)
* End Repair and Size Selection- edited to size select for 400bp (2016-08-24)
**Made a diluted bead mixture with the ratio of 109ul beads: 75ul dH<sub>2</sub>O and added 160 ul of mixture to each tube
**Made a diluted bead mixture with the ratio of 109ul beads: 75ul dH<sub>2</sub>O and added 160 ul of mixture to each tube
[[CTR:75px|75px]]  
[[http://openwetware.org/wiki/Image:Size_selected_08_24_2016.JPG|75px]]  


1) 2uL 100bp low scale ladder,  
1) 2uL 100bp low scale ladder,  

Revision as of 17:03, 24 August 2016

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Whole Genome Sequencing PCR-Free Library Prep for TRBL

  • Used TruSeq Library Prep Kit
  • Diluted sample 02N9685 to 1ug of DNA in 100 uL total of Buffer AE
  • Sonication (2016-08-23)
    • BioRuptor NGS: 4 cycles of 30 seconds on, 90 seconds off, High Power

1) 2uL 100bp low scale ladder,

3) 2uL sheared TRBL →Sheared DNA to ~400bp.

  • Dried down samples to get concentrated volume of 50 uL using SpeedVac (2016-08-23)
  • Clean-up fragmented DNA (2016-08-24)
  • End Repair and Size Selection- edited to size select for 400bp (2016-08-24)
    • Made a diluted bead mixture with the ratio of 109ul beads: 75ul dH2O and added 160 ul of mixture to each tube

[[1]]

1) 2uL 100bp low scale ladder,

3) 2uL TRBL

  • Adenylate 3' Ends (2016-08-25)
    • Ran on JOHN thermocycler under program: SDCRKAD, Block B
  • Ligate Adapters (2016-08-25)
    • Assigned Adapter
  • Gel of Final Library:

60px

1) 2uL 100bp low scale ladder,

3) 2uL TRBL

  • Picogreen: ng/μL
  • Run sample on BioAnalyzer DNA High Sensitivity Chip (2016-08-2)

550px

  • [ Bioanalyzer Results]
  • Sent 10nM to UC Davis for sequencing (Illumina HiSeq 250 PER (Rapid Mode)) (2016-08-2)