Caltech Synthetic Biology Journal Club: Difference between revisions
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== Meetings == | == Meetings == | ||
* First meeting 1/ | * First meeting POSTPONED to 1/28/2011, 4pm, location Steele Library. | ||
== Weekly Topics == | == Weekly Topics == | ||
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**'''Synthetic biology: applications come of age.''' Khalil AS and Collins JJ. ''Nature Reviews Genetics'' '''11''': 367-379 (2010) [http://dx.doi.org/10.1038/nrg2775] | **'''Synthetic biology: applications come of age.''' Khalil AS and Collins JJ. ''Nature Reviews Genetics'' '''11''': 367-379 (2010) [http://dx.doi.org/10.1038/nrg2775] | ||
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*Week 2: | *Week 2: DNA Level Control (Emzo) | ||
**'''Construction of a genetic toggle switch in Escherichia coli.''' Gardner TS, Cantor CR and Collins JJ. ''Nature'' '''403''': 339-342 (2000). [http://dx.doi.org/10.1038/35002131] | **'''Construction of a genetic toggle switch in Escherichia coli.''' Gardner TS, Cantor CR and Collins JJ. ''Nature'' '''403''': 339-342 (2000). [http://dx.doi.org/10.1038/35002131] | ||
**'''Synthetic gene networks that count.''' Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ. ''Science'' '''324''':1199-1202 (2009). [http://dx.doi.org/10.1126/science.1172005] | **'''Synthetic gene networks that count.''' Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ. ''Science'' '''324''':1199-1202 (2009). [http://dx.doi.org/10.1126/science.1172005] | ||
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*Week 4: RNA Based Regulation (Joe) | *Week 4: RNA Based Regulation (Joe) | ||
**'''RNA synthetic biology''' Issacs FJ, Dwyer DJ, Collins JJ. ''Nature Biotechnology'' '''24''':545-555 (2006) [http://dx.doi.org/10.1038/nbt1208] | |||
**'''Higher-Order Cellular Information Processing with Synthetic RNA Devices''' Win MN, Smolke CD. ''Science.'' '''322''':456-460 (2008) [http:/dx.doi.org/10.1126/science.1160311] | |||
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*Week 5: Multiple Genes - Gene Network Engineering (Joe) | *Week 5: Multiple Genes - Gene Network Engineering (Joe) | ||
**'''Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models''' Lewis NE et al. '''Molecular Systems Biology 6:390''' (2010) [http://dx.doi.org/10.1038/msb.2010.47] | |||
**'''Programming cells by multiplex genome engineering and accelerated evolution''' Wang HH, Issacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM. ''Nature'' '''460''':894-898 (2009) [http://dx.doi.org/10.1038/nature08187] | |||
**'''Manufacturing Molecules Through Metabolic Engineering''' Keasling, JD. ''Science.'' '''330''':1355-1358 (2010) [http://dx.doi.org/10.1126/science.1193990] | |||
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*Week 6: Multiple Cells - Quorum Sensing and Cell-Cell Communication (Joe) | *Week 6: Multiple Cells - Quorum Sensing and Cell-Cell Communication (Joe) | ||
**'''A synthetic multicellular system for programmed pattern formation''' Basu S, Gerchman Y, Collins CH, Arnold FH, Weiss R. ''Nature'' '''434''' (2005) [http://dx.doi.org/10.1038/nature03461] | |||
**'''A synthetic Escherichia coli predator–prey ecosystem''' Balagadde FK, Song H, Ozaki J, Collins CH, Barnet M, Arnold FH, Quake SR, You L. '''Molecular Systems Biology 4:187''' (2008) [http://dx.doi.org/10.1038/msb.2008.24] | |||
**'''Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’''' Tamsir A, Tabor JJ, Voigt CA. ''Nature'' (2010) [http://dx.doi.org/10.1038/nature09565] | |||
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Latest revision as of 14:42, 24 January 2011
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SynBio @ Caltech
Meetings
Weekly TopicsWe'll start with a broad introduction to popular topics in synthetic biology, then figure out the logistics for future weeks - this will most likely involve rotating responsibility for presenting material each week. If you think the first few weeks will only cover old papers for you, feel free to jump in later.
Other
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