Chan:Bioinformatics Sites

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<b>Arabidopsis thaliana:</b><br>
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<b>Arabidopsis tools:</b><br>
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[http://www.arabidopsis.org/ TAIR (The Arabidopsis Information Resource)]<br>
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[http://atensembl.arabidopsis.info/index.html AtEnsembl]<br>
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[http://www.arabidopsis.org/Blast/ TAIR BLAST search]<br>
[http://www.arabidopsis.org/Blast/ TAIR BLAST search]<br>
[http://tigrblast.tigr.org/er-blast/index.cgi?project=ath1 TIGR Arabidopsis BLAST Search]<br>
[http://tigrblast.tigr.org/er-blast/index.cgi?project=ath1 TIGR Arabidopsis BLAST Search]<br>
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[http://www.arabidopsis.org/servlets/sv TAIR Seqviewer]<br>
 
[http://signal.salk.edu/cgi-bin/tdnaexpress Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express]<br>
[http://signal.salk.edu/cgi-bin/tdnaexpress Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express]<br>
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[http://signal.salk.edu/tdnaprimers.html Primer design for T-DNAs]<br>
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<b>Arabidopsis genome databases:</b><br>
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[http://www.arabidopsis.org/ TAIR (The Arabidopsis Information Resource)]<br>
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[http://www.arabidopsis.org/servlets/sv TAIR Seqviewer]<br>
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[http://atensembl.arabidopsis.info/index.html AtEnsembl]<br>
[http://www.weigelworld.org/resources WeigelWorld Resources incl. AtGenExpress]<br>
[http://www.weigelworld.org/resources WeigelWorld Resources incl. AtGenExpress]<br>
[http://epigenomics.mcdb.ucla.edu/DNAmeth/ Jacobsen/Ecker Arabidopsis Methylome Database]<br>
[http://epigenomics.mcdb.ucla.edu/DNAmeth/ Jacobsen/Ecker Arabidopsis Methylome Database]<br>
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[http://mpss.udel.edu/at/ MPSS Small RNAs and Transcripts]<br>
[http://mpss.udel.edu/at/ MPSS Small RNAs and Transcripts]<br>
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<br>
 
<b>Bioinformatics:</b><br>
<b>Bioinformatics:</b><br>
[http://www.ncbi.nlm.nih.gov/blast/ BLAST at NCBI]<br>
[http://www.ncbi.nlm.nih.gov/blast/ BLAST at NCBI]<br>
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[http://www.ebi.ac.uk/clustalw/ ClustalW at EBI]<br>
[http://www.ebi.ac.uk/clustalw/ ClustalW at EBI]<br>
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<br>
 
<b>Experimental:</b><br>
<b>Experimental:</b><br>
[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer3]<br>
[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer3]<br>
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[http://helix.wustl.edu/dcaps/dcaps.html dCAPs Finder]<br>
[http://helix.wustl.edu/dcaps/dcaps.html dCAPs Finder]<br>
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<br>
 
<b>Literature:</b><br>
<b>Literature:</b><br>
[http://www.ncbi.nlm.nih.gov/ NCBI]<br>
[http://www.ncbi.nlm.nih.gov/ NCBI]<br>

Revision as of 23:15, 3 December 2007

Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Bioinformatics:
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI


Experimental:
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder


Literature:
NCBI
ISI Web of Knowledge
Google Scholar

Chan Lab Homepage

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