Chan:Bioinformatics Sites

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[http://asrp.cgrb.oregonstate.edu/ Carrington Lab siRNA Database]<br>
[http://asrp.cgrb.oregonstate.edu/ Carrington Lab siRNA Database]<br>
[http://mpss.udel.edu/at/ MPSS Small RNAs and Transcripts]<br>
[http://mpss.udel.edu/at/ MPSS Small RNAs and Transcripts]<br>
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<b>Yeast Genome Databases:</b><br>
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[http://www.genedb.org/genedb/pombe/ ''S.pombe'' genome database]<br>
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[http://www.yeastgenome.org/ ''S.cerevisiae'' genome database]<br>
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<b>Bioinformatics:</b><br>
<b>Bioinformatics:</b><br>

Revision as of 21:11, 17 April 2009


Chan Lab

Department of Plant Biology at UC Davis




Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs
Dirk Inze GATEWAY vectors


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Todd Mockler expression tools
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Yeast Genome Databases:
S.pombe genome database
S.cerevisiae genome database


Bioinformatics:
NCBI homepage
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI
Dialign multiple sequence alignment
YOGY homolog search
Inparanoid homolog search


Experimental:
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder
Chi-square calculator
CODDLE for TILLING


Literature:
NCBI
ISI Knowledge
Google Scholar

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