Chan:Bioinformatics Sites

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[http://helix.wustl.edu/dcaps/dcaps.html dCAPs Finder]<br>
[http://helix.wustl.edu/dcaps/dcaps.html dCAPs Finder]<br>
[http://www.fourmilab.ch/rpkp/experiments/analysis/chiCalc.html Chi-square calculator]<br>
[http://www.fourmilab.ch/rpkp/experiments/analysis/chiCalc.html Chi-square calculator]<br>
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[http://www.proweb.org/coddle/ CODDLE for TILLING]
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[http://www.proweb.org/coddle/ CODDLE for TILLING]<br>
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[http://www-rcf.usc.edu/~forsburg/#info Forsburg lab S.pombe methods]<br>
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<b>Literature:</b><br>
<b>Literature:</b><br>

Revision as of 12:41, 13 May 2009


Chan Lab

Department of Plant Biology at UC Davis




Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs
Dirk Inze GATEWAY vectors


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Todd Mockler expression tools
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Yeast Genome Databases:
S.pombe genome database
S.cerevisiae genome database


Bioinformatics:
NCBI homepage
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI
Dialign multiple sequence alignment
YOGY homolog search
Inparanoid homolog search
MEME motif finder


Experimental:
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder
Chi-square calculator
CODDLE for TILLING
Forsburg lab S.pombe methods


Literature:
NCBI
ISI Knowledge
Google Scholar

Personal tools