Chan:Bioinformatics Sites

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 72: Line 72:
----
----
<b>Experimental:</b><br>
<b>Experimental:</b><br>
 +
[http://www3.interscience.wiley.com/browse/?type=CURRENT_PROTOCOL Current Protocols]<br>
[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer3]<br>
[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer3]<br>
[http://www.basic.northwestern.edu/biotools/oligocalc.html Oligo Calculator]<br>
[http://www.basic.northwestern.edu/biotools/oligocalc.html Oligo Calculator]<br>

Revision as of 14:30, 3 August 2009


Chan Lab

Department of Plant Biology at UC Davis




Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs
Dirk Inze GATEWAY vectors


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Todd Mockler expression tools
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Yeast Genome Databases:
S.pombe genome database
S.cerevisiae genome database


Bioinformatics:
NCBI homepage
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI
Dialign multiple sequence alignment
YOGY homolog search
Inparanoid homolog search
MEME motif finder


Experimental:
Current Protocols
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder
Chi-square calculator
CODDLE for TILLING
Forsburg lab S.pombe methods


Literature:
NCBI
ISI Knowledge
Google Scholar

Personal tools