Chan:Bioinformatics Sites

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[http://www-plb.ucdavis.edu/index.html Department of Plant Biology] at [http://www.ucdavis.edu/ UC Davis]
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[http://www-plb.ucdavis.edu/ Department of Plant Biology], [http://www.ucdavis.edu/ UC Davis] and [http://www.hhmi.org HHMI]
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[[Chan:Bioinformatics Sites|Bioinformatics]]
[[Chan:Bioinformatics Sites|Bioinformatics]]
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[[Chan:Resources|Resources]]
 
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[[Chan:Teaching|Teaching]]
 
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[[Chan:Contact|Contact]]
[[Chan:Contact|Contact]]
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<b>Experimental:</b><br>
<b>Experimental:</b><br>
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[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer3]<br>
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[http://www3.interscience.wiley.com/browse/?type=CURRENT_PROTOCOL Current Protocols]<br>
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[http://frodo.wi.mit.edu/primer3/ Primer3]<br>
[http://www.basic.northwestern.edu/biotools/oligocalc.html Oligo Calculator]<br>
[http://www.basic.northwestern.edu/biotools/oligocalc.html Oligo Calculator]<br>
[http://rebase.neb.com/rebase/rebase.html REBase at NEB]<br>
[http://rebase.neb.com/rebase/rebase.html REBase at NEB]<br>

Current revision


Chan Lab

Department of Plant Biology, UC Davis and HHMI




Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs
Dirk Inze GATEWAY vectors


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Todd Mockler expression tools
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Yeast Genome Databases:
S.pombe genome database
S.cerevisiae genome database


Bioinformatics:
NCBI homepage
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI
Dialign multiple sequence alignment
YOGY homolog search
Inparanoid homolog search
MEME motif finder


Experimental:
Current Protocols
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder
Chi-square calculator
CODDLE for TILLING
Forsburg lab S.pombe methods


Literature:
NCBI
ISI Knowledge
Google Scholar

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