Chan:Publications

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Please [mailto:srchan@ucdavis.edu email Simon] if you would like the pdf file:<br>
Please [mailto:srchan@ucdavis.edu email Simon] if you would like the pdf file:<br>
-
<br>
 
-
<b>Centromeres and chromosome inheritance:</b>
 
<br>
<br>
 +
Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br>
The rapidly evolving centromere-specific histone has stringent functional
The rapidly evolving centromere-specific histone has stringent functional
requirements in ''Arabidopsis thaliana''<br>
requirements in ''Arabidopsis thaliana''<br>
-
Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br>
 
Genetics, in press<br>  
Genetics, in press<br>  
 +
Ravi, M. and Chan, S.W.L.<br>
Haploid plants produced by centromere-mediated genome elimination<br>
Haploid plants produced by centromere-mediated genome elimination<br>
-
Ravi, M. and Chan, S.W.L.<br>
 
Nature, 464, 615-618 (2010)<br>
Nature, 464, 615-618 (2010)<br>
-
<br>
 
-
<b>DNA methylation and gene silencing:</b>
 
-
<br>
 
 +
Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.<br
Accurate sodium bisulfite sequencing in plants<br>
Accurate sodium bisulfite sequencing in plants<br>
-
Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.<br>
 
Epigenetics, 5, 47-49 (2010)<br>
Epigenetics, 5, 47-49 (2010)<br>
-
Inputs and outputs for chromatin-targeted RNAi<br>
 
Chan, S.W.L. <br>
Chan, S.W.L. <br>
 +
Inputs and outputs for chromatin-targeted RNAi<br>
Trends in Plant Sciences 13, 383-9 (2008) [review article]<br>
Trends in Plant Sciences 13, 383-9 (2008) [review article]<br>
-
 
+
<br>
-
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br>
+
<b>Before starting at UC Davis:</b><br>
 +
<br>
Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br>
Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br>
 +
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br>
PLoS Biology 4 No. 11 e363 (2006)
PLoS Biology 4 No. 11 e363 (2006)
-
Increased outcrossing in ''hothead'' mutants.<br>
 
Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br>
Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br>
 +
Increased outcrossing in ''hothead'' mutants.<br>
Nature 443, E8 (2006)
Nature 443, E8 (2006)
 +
Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br>
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br>
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br>
-
Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br>
 
Cell 126, 1189-1201 (2006)
Cell 126, 1189-1201 (2006)
-
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br>
 
Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br>
Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br>
 +
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br>
Cell 126, 93-106 (2006)
Cell 126, 93-106 (2006)
 +
Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br>
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br>
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br>
-
Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br>
 
PLoS Genetics 2, No. 6 e83 (2006)
PLoS Genetics 2, No. 6 e83 (2006)
 +
Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br>
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br>
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br>
-
Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br>
 
Nature Reviews Genetics 6, 351-360 (2005) [review article]
Nature Reviews Genetics 6, 351-360 (2005) [review article]
 +
Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br>
Applications of DNA tiling arrays for whole-genome analysis.<br>
Applications of DNA tiling arrays for whole-genome analysis.<br>
-
Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br>
 
Genomics 85, 1-15 (2005) [review article]
Genomics 85, 1-15 (2005) [review article]
-
siRNA-induced transcriptional gene silencing in human cells.<br>
 
Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br>
Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br>
 +
siRNA-induced transcriptional gene silencing in human cells.<br>
Science 305, 1289-1292 (2004)
Science 305, 1289-1292 (2004)
-
RNA silencing genes control de novo DNA methylation.<br>
 
Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br>
Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br>
 +
RNA silencing genes control de novo DNA methylation.<br>
Science 303, 1336 (2004)
Science 303, 1336 (2004)
-
 
+
Chan, S.R.W.L. and Blackburn, E.H.<br>
-
<b>Telomeres and telomerase:</b>
+
-
 
+
Telomeres and telomerase.<br>
Telomeres and telomerase.<br>
-
Chan, S.R.W.L. and Blackburn, E.H.<br>
 
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)
 +
Chan, S.W.L. and Blackburn, E.H.<br>
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br>
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br>
-
Chan, S.W.L. and Blackburn, E.H.<br>
 
Molecular Cell 11, 1379-1387 (2003)
Molecular Cell 11, 1379-1387 (2003)
 +
Chan, S.W.L. and Blackburn, E.H.<br>
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br>
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br>
-
Chan, S.W.L. and Blackburn, E.H.<br>
 
Oncogene 21, 553-563 (2002) [review article]
Oncogene 21, 553-563 (2002) [review article]
 +
Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br>
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br>
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br>
-
Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br>
 
Current Biology 11, 1240-1250 (2001)
Current Biology 11, 1240-1250 (2001)
 +
Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br>
Molecular manifestations and molecular determinants of telomere capping.<br>
Molecular manifestations and molecular determinants of telomere capping.<br>
-
Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br>
 
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)<br>
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)<br>
<br>
<br>

Revision as of 19:23, 11 July 2010


Chan Lab

Department of Plant Biology at UC Davis




Please email Simon if you would like the pdf file:

Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.
The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana
Genetics, in press

Ravi, M. and Chan, S.W.L.
Haploid plants produced by centromere-mediated genome elimination
Nature, 464, 615-618 (2010)

Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.<br Accurate sodium bisulfite sequencing in plants
Epigenetics, 5, 47-49 (2010)

Chan, S.W.L.
Inputs and outputs for chromatin-targeted RNAi
Trends in Plant Sciences 13, 383-9 (2008) [review article]

Before starting at UC Davis:

Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.
PLoS Biology 4 No. 11 e363 (2006)

Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.
Increased outcrossing in hothead mutants.
Nature 443, E8 (2006)

Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis.
Cell 126, 1189-1201 (2006)

Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in Arabidopsis thaliana.
Cell 126, 93-106 (2006)

Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis.
PLoS Genetics 2, No. 6 e83 (2006)

Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.
Gardening the genome: DNA methylation in Arabidopsis thaliana.
Nature Reviews Genetics 6, 351-360 (2005) [review article]

Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.
Applications of DNA tiling arrays for whole-genome analysis.
Genomics 85, 1-15 (2005) [review article]

Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.
siRNA-induced transcriptional gene silencing in human cells.
Science 305, 1289-1292 (2004)

Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.
RNA silencing genes control de novo DNA methylation.
Science 303, 1336 (2004)

Chan, S.R.W.L. and Blackburn, E.H.
Telomeres and telomerase.
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)

Chan, S.W.L. and Blackburn, E.H.
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.
Molecular Cell 11, 1379-1387 (2003)

Chan, S.W.L. and Blackburn, E.H.
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.
Oncogene 21, 553-563 (2002) [review article]

Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.
Current Biology 11, 1240-1250 (2001)

Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.
Molecular manifestations and molecular determinants of telomere capping.
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)

note: * denotes equal contribution

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