Chan:Publications

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Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br>
+
&bull; Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.<br>
The rapidly evolving centromere-specific histone has stringent functional
The rapidly evolving centromere-specific histone has stringent functional
requirements in ''Arabidopsis thaliana''<br>
requirements in ''Arabidopsis thaliana''<br>
Genetics, in press<br>  
Genetics, in press<br>  
-
Ravi, M. and Chan, S.W.L.<br>
+
&bull; Ravi, M. and Chan, S.W.L.<br>
Haploid plants produced by centromere-mediated genome elimination<br>
Haploid plants produced by centromere-mediated genome elimination<br>
Nature, 464, 615-618 (2010)<br>
Nature, 464, 615-618 (2010)<br>
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Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.<br>
+
&bull; Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.<br>
Accurate sodium bisulfite sequencing in plants<br>
Accurate sodium bisulfite sequencing in plants<br>
Epigenetics, 5, 47-49 (2010)<br>
Epigenetics, 5, 47-49 (2010)<br>
-
Chan, S.W.L. <br>
+
&bull; Chan, S.W.L. <br>
Inputs and outputs for chromatin-targeted RNAi<br>
Inputs and outputs for chromatin-targeted RNAi<br>
Trends in Plant Sciences 13, 383-9 (2008) [review article]<br>
Trends in Plant Sciences 13, 383-9 (2008) [review article]<br>
Line 57: Line 57:
<b>Before UC Davis:</b><br>
<b>Before UC Davis:</b><br>
<br>
<br>
-
Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br>
+
&bull; Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.<br>
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br>
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.<br>
PLoS Biology 4 No. 11 e363 (2006)
PLoS Biology 4 No. 11 e363 (2006)
-
Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br>
+
&bull; Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.<br>
Increased outcrossing in ''hothead'' mutants.<br>
Increased outcrossing in ''hothead'' mutants.<br>
Nature 443, E8 (2006)
Nature 443, E8 (2006)
-
Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br>
+
&bull; Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.<br>
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br>
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in ''Arabidopsis''.<br>
Cell 126, 1189-1201 (2006)
Cell 126, 1189-1201 (2006)
-
Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br>
+
&bull; Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.<br>
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br>
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in ''Arabidopsis thaliana''.<br>
Cell 126, 93-106 (2006)
Cell 126, 93-106 (2006)
-
Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br>
+
&bull; Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.<br>
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br>
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in ''Arabidopsis''.<br>
PLoS Genetics 2, No. 6 e83 (2006)
PLoS Genetics 2, No. 6 e83 (2006)
-
Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br>
+
&bull; Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.<br>
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br>
Gardening the genome: DNA methylation in ''Arabidopsis thaliana''.<br>
Nature Reviews Genetics 6, 351-360 (2005) [review article]
Nature Reviews Genetics 6, 351-360 (2005) [review article]
-
Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br>
+
&bull; Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.<br>
Applications of DNA tiling arrays for whole-genome analysis.<br>
Applications of DNA tiling arrays for whole-genome analysis.<br>
Genomics 85, 1-15 (2005) [review article]
Genomics 85, 1-15 (2005) [review article]
-
Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br>
+
&bull; Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.<br>
siRNA-induced transcriptional gene silencing in human cells.<br>
siRNA-induced transcriptional gene silencing in human cells.<br>
Science 305, 1289-1292 (2004)
Science 305, 1289-1292 (2004)
-
Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br>
+
&bull; Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.<br>
RNA silencing genes control de novo DNA methylation.<br>
RNA silencing genes control de novo DNA methylation.<br>
Science 303, 1336 (2004)
Science 303, 1336 (2004)
-
Chan, S.R.W.L. and Blackburn, E.H.<br>
+
&bull; Chan, S.R.W.L. and Blackburn, E.H.<br>
Telomeres and telomerase.<br>
Telomeres and telomerase.<br>
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)
-
Chan, S.W.L. and Blackburn, E.H.<br>
+
&bull; Chan, S.W.L. and Blackburn, E.H.<br>
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br>
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.<br>
Molecular Cell 11, 1379-1387 (2003)
Molecular Cell 11, 1379-1387 (2003)
-
Chan, S.W.L. and Blackburn, E.H.<br>
+
&bull; Chan, S.W.L. and Blackburn, E.H.<br>
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br>
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.<br>
Oncogene 21, 553-563 (2002) [review article]
Oncogene 21, 553-563 (2002) [review article]
-
Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br>
+
&bull; Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.<br>
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br>
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.<br>
Current Biology 11, 1240-1250 (2001)
Current Biology 11, 1240-1250 (2001)
-
Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br>
+
&bull; Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.<br>
Molecular manifestations and molecular determinants of telomere capping.<br>
Molecular manifestations and molecular determinants of telomere capping.<br>
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)<br>
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)<br>

Revision as of 00:19, 23 July 2010


Chan Lab

Department of Plant Biology at UC Davis




Please email Simon if you would like the pdf file:

• Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L.
The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana
Genetics, in press

• Ravi, M. and Chan, S.W.L.
Haploid plants produced by centromere-mediated genome elimination
Nature, 464, 615-618 (2010)

• Henderson, I.R., Chan, S.R., Cao, X., Johnson. L and Jacobsen, S.E.
Accurate sodium bisulfite sequencing in plants
Epigenetics, 5, 47-49 (2010)

• Chan, S.W.L.
Inputs and outputs for chromatin-targeted RNAi
Trends in Plant Sciences 13, 383-9 (2008) [review article]

Before UC Davis:

• Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E.
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.
PLoS Biology 4 No. 11 e363 (2006)

• Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E.
Increased outcrossing in hothead mutants.
Nature 443, E8 (2006)

• Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R.
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis.
Cell 126, 1189-1201 (2006)

• Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E.
An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in Arabidopsis thaliana.
Cell 126, 93-106 (2006)

• Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E.
RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis.
PLoS Genetics 2, No. 6 e83 (2006)

• Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E.
Gardening the genome: DNA methylation in Arabidopsis thaliana.
Nature Reviews Genetics 6, 351-360 (2005) [review article]

• Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R.
Applications of DNA tiling arrays for whole-genome analysis.
Genomics 85, 1-15 (2005) [review article]

• Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J.
siRNA-induced transcriptional gene silencing in human cells.
Science 305, 1289-1292 (2004)

• Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E.
RNA silencing genes control de novo DNA methylation.
Science 303, 1336 (2004)

• Chan, S.R.W.L. and Blackburn, E.H.
Telomeres and telomerase.
Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004)

• Chan, S.W.L. and Blackburn, E.H.
Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining.
Molecular Cell 11, 1379-1387 (2003)

• Chan, S.W.L. and Blackburn, E.H.
New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin.
Oncogene 21, 553-563 (2002) [review article]

• Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H.
Altering telomere structure allows telomerase to act in yeast lacking ATM kinases.
Current Biology 11, 1240-1250 (2001)

• Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H.
Molecular manifestations and molecular determinants of telomere capping.
Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)

note: * denotes equal contribution

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