Chan:Publications

Chan Lab

Department of Plant Biology at UC Davis

---

---

Home Research Publications People Links Bioinformatics Contact

Please email Simon if you would like the pdf file: • Ravi, M., Shibata, F., Ramahi, J.S., Nagaki, K., Chen, C., Murata, M. & Chan, S.W.L. Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana PLoS Genetics, in press • Marimuthu, M.P.A.*, Jolivet, S.*, Ravi, M.*, Pereira, L., Davda, J.N., Cromer, L., Wang, L., Nogué, F., Chan, S.W.L.#, Siddiqi, I.# & Mercier, R.# Synthetic clonal reproduction through seeds Science, 331, 876 (2011) (* equal contribution, # corresponding authors) • Chan, S.W.L. Chromosome engineering: power tools for plant genetics Trends in Biotechnology, 12, 605-10 (2010) [review article] • Ravi, M., Kwong, P.N., Menorca, R.M.G., Valencia, J.T., Ramahi, J.S., Stewart, J.L., Tran, R.K., Sundaresan, V., Comai, L. and Chan, S.W.L. The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana Genetics, 186, 461–471 (2010) • Ravi, M. and Chan, S.W.L. Haploid plants produced by centromere-mediated genome elimination Nature, 464, 615-618 (2010) • Chan, S.W.L. Inputs and outputs for chromatin-targeted RNAi Trends in Plant Sciences 13, 383-9 (2008) [review article] Before UC Davis: • Greenberg, M.V.C., Ausin, I., Chan, S.W.L, Cokus, S.J., Cuperus, J.T., Feng, S., Law, J.A., Chu, C., Pellegrini, M., Carrington, J.C. and Jacobsen, S.E. Identification of genes required for de novo DNA methylation in Arabidopsis Epigenetics, 6, 344-355 (2011) • Henderson, I.R., Chan, S.R., Cao, X., Johnson, L. and Jacobsen, S.E. Accurate sodium bisulfite sequencing in plants Epigenetics, 5, 47-49 (2010) • Chan, S.W.L., Zhang, X.Y., Bernatavichute, Y.V. and Jacobsen, S.E. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biology 4 No. 11 e363 (2006) • Peng P., Chan, S.W.L., Shah, G.A. and Jacobsen, S.E. Increased outcrossing in hothead mutants. Nature 443, E8 (2006) • Zhang, X.*, Yazaki, J.*, Sundaresan, A.*, Cokus, S.*, Chan, S.W.L., Chen, H., Henderson, I.R., Shinn, P., Pellegrini, M., Jacobsen, S.E., and Ecker, J.R. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis. Cell 126, 1189-1201 (2006) (* = equal contribution) • Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W.L., Lagrange, T., Pikaard, C.S. and Jacobsen, S.E. An ARGONAUTE4-containing nuclear processing center co-localized with Cajal bodies in Arabidopsis thaliana. Cell 126, 93-106 (2006) • Chan, S.W.L., Henderson, I.R., Zhang, X.Y., Chien, J.S.C., Shah, G. and Jacobsen, S.E. RNAi, DRD1 and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis. PLoS Genetics 2, No. 6 e83 (2006) • Chan, S.W.L.*, Henderson, I.R.* and Jacobsen, S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Reviews Genetics 6, 351-360 (2005) [review article] (* = equal contribution) • Mockler, T.C., Chan, S., Sundaresan A., Chen, H., Jacobsen S.E. and Ecker, J.R. Applications of DNA tiling arrays for whole-genome analysis. Genomics 85, 1-15 (2005) [review article] • Morris, K.V., Chan, S.W.L., Jacobsen, S.E. and Looney, D.J. siRNA-induced transcriptional gene silencing in human cells. Science 305, 1289-1292 (2004) • Chan, S.W.L., Zilberman D., Xie, Z., Johansen, L.K., Carrington, J.C. and Jacobsen, S.E. RNA silencing genes control de novo DNA methylation. Science 303, 1336 (2004) • Chan, S.R.W.L. and Blackburn, E.H. Telomeres and telomerase. Phil. Trans. R. Soc. Lond. B 359, 109-121 (2004) • Chan, S.W.L. and Blackburn, E.H. Telomerase and ATM/Tel1p protect telomeres from non-homologous end-joining. Molecular Cell 11, 1379-1387 (2003) • Chan, S.W.L. and Blackburn, E.H. New ways not to make ends meet: telomerase, DNA damage proteins and heterochromatin. Oncogene 21, 553-563 (2002) [review article] • Chan, S.W.L., Chang, J., Prescott, J. and Blackburn, E.H. Altering telomere structure allows telomerase to act in yeast lacking ATM kinases. Current Biology 11, 1240-1250 (2001) • Blackburn, E.H., Chan, S., Chang, J., Fulton, T.B., Krauskopf, A., McEachern, M., Prescott, J., Roy, J., Smith, C. and Wang, H. Molecular manifestations and molecular determinants of telomere capping. Cold Spring Harbor Symposia on Quantitative Biology, 65, 253-263 (2000)

Media:Example.ogg