Chandra:Software and Databases: Difference between revisions
m (Suma:Software and Databases moved to Chandra:Software and Databases) |
No edit summary |
||
Line 1: | Line 1: | ||
{{SumaLab}} | {{SumaLab}} | ||
=General= | ==General== | ||
==Lectin Database== | ===Lectin Database=== | ||
The lectin databased contains structure and sequence information on plant lectins. The database has been completely manually annotated. It is available at http://nscdb.bic.physics.iisc.ernet.in/. | The lectin databased contains structure and sequence information on plant lectins. The database has been completely manually annotated. It is available at http://nscdb.bic.physics.iisc.ernet.in/. | ||
=Structural bioinformatics= | ==Structural bioinformatics== | ||
==HBPRINT== | ===HBPRINT=== | ||
==DLRS== | ===DLRS=== | ||
More information soon... | More information soon... | ||
Line 14: | Line 14: | ||
=Systems biology= | ==Systems biology== | ||
==Pathway Analyser== | ===Pathway Analyser=== | ||
PathwayAnalyser (PA) is a tool for systems biologists for analysis of metabolic pathways, particularly by Flux Balance Analysis and ODE simulation. PA interfaces with the GNU Linear Programming Toolkit (GLPK) for linear programming, as well as with Taylor for performing high precision simulations (e.g. using GMP). It can give a comprehensive report on gene deletions from the Systems Biology Markup Language (SBML) Model input. It is currently a command-line tool but a GUI may be added soon. | PathwayAnalyser (PA) is a tool for systems biologists for analysis of metabolic pathways, particularly by Flux Balance Analysis and ODE simulation. PA interfaces with the GNU Linear Programming Toolkit (GLPK) for linear programming, as well as with Taylor for performing high precision simulations (e.g. using GMP). It can give a comprehensive report on gene deletions from the Systems Biology Markup Language (SBML) Model input. It is currently a command-line tool but a GUI may be added soon. | ||
Line 23: | Line 23: | ||
=Immunology= | ==Immunology== | ||
==Genetic Algorithm for studying T-cell recognition== | ===Genetic Algorithm for studying T-cell recognition=== | ||
More information soon... | More information soon... |
Revision as of 23:14, 13 December 2005
Chandra Lab |
Research |
People |
Courses |
Software and Databases |
Publications |
Resources |
Affiliation |
Funding |
Contact |
General
Lectin Database
The lectin databased contains structure and sequence information on plant lectins. The database has been completely manually annotated. It is available at http://nscdb.bic.physics.iisc.ernet.in/.
Structural bioinformatics
HBPRINT
DLRS
More information soon...
Systems biology
Pathway Analyser
PathwayAnalyser (PA) is a tool for systems biologists for analysis of metabolic pathways, particularly by Flux Balance Analysis and ODE simulation. PA interfaces with the GNU Linear Programming Toolkit (GLPK) for linear programming, as well as with Taylor for performing high precision simulations (e.g. using GMP). It can give a comprehensive report on gene deletions from the Systems Biology Markup Language (SBML) Model input. It is currently a command-line tool but a GUI may be added soon.
It is written in C++ and uses libSBML and GLPK. PA is meant for linux (excl. cygwin at the moment) but it is planned that it will be usable in all platforms.
Immunology
Genetic Algorithm for studying T-cell recognition
More information soon...